miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 126434 0.66 0.723613
Target:  5'- ---cGCGCGCGCCgagCCCGcCGCgcgCUCc -3'
miRNA:   3'- cgcaUGUGCGCGGg--GGGCaGCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 104720 0.66 0.742483
Target:  5'- uGCGUGgccgcCACGCGCCCCacggCCG-CGCa--- -3'
miRNA:   3'- -CGCAU-----GUGCGCGGGG----GGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 119357 0.66 0.742483
Target:  5'- gGCGggcgGCGCGCcugccGCCCCCUGcUGCccCUCc -3'
miRNA:   3'- -CGCa---UGUGCG-----CGGGGGGCaGCGa-GAG- -5'
21658 3' -60.5 NC_004812.1 + 125973 0.66 0.714065
Target:  5'- cGCGUcC-CGCGCCCCgCGUcCGCg--- -3'
miRNA:   3'- -CGCAuGuGCGCGGGGgGCA-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 343 0.66 0.723613
Target:  5'- uGCGUcCACGCGCUCgccaCCC-UCaCUCUCg -3'
miRNA:   3'- -CGCAuGUGCGCGGG----GGGcAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 4365 0.66 0.714065
Target:  5'- cGCGUgcaacaugGCGCGCGCCCUggCCGagGCgUCg- -3'
miRNA:   3'- -CGCA--------UGUGCGCGGGG--GGCagCG-AGag -5'
21658 3' -60.5 NC_004812.1 + 47697 0.66 0.760995
Target:  5'- cGCGgcCGCGgGCCCCCgGgCGUaCUg -3'
miRNA:   3'- -CGCauGUGCgCGGGGGgCaGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 31752 0.66 0.714065
Target:  5'- gGCGgggGCGCgGCGCCCgCCCcaCGCcaccgaguUCUCg -3'
miRNA:   3'- -CGCa--UGUG-CGCGGG-GGGcaGCG--------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 50091 0.66 0.723613
Target:  5'- cGCGUGCugGcCGUgguggacgaCCCCCGggggcccuucuUCGCggggCUCa -3'
miRNA:   3'- -CGCAUGugC-GCG---------GGGGGC-----------AGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 71976 0.66 0.723613
Target:  5'- cGCGggaggcuCACGCGCCCCggggcuggggcgCgGUCG-UCUCg -3'
miRNA:   3'- -CGCau-----GUGCGCGGGG------------GgCAGCgAGAG- -5'
21658 3' -60.5 NC_004812.1 + 130562 0.66 0.711188
Target:  5'- cGCGaggGCGcCGCGCCCCcggccccggccccgCCGUCGC-Cg- -3'
miRNA:   3'- -CGCa--UGU-GCGCGGGG--------------GGCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 147913 0.66 0.723613
Target:  5'- cGCGga-GgGCGUCCCgCCGUCGCa--- -3'
miRNA:   3'- -CGCaugUgCGCGGGG-GGCAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 411 0.66 0.723613
Target:  5'- ---cGCGCGCagGCCUUCCGcgcgcggCGCUCUCg -3'
miRNA:   3'- cgcaUGUGCG--CGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 131221 0.66 0.733088
Target:  5'- gGCGaGCGCGCcgaccuCCCCCUGUguCUCUCu -3'
miRNA:   3'- -CGCaUGUGCGc-----GGGGGGCAgcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 20352 0.66 0.714065
Target:  5'- gGCGaaaGCGCGCCUCCgcaaaGUCGCgCUUg -3'
miRNA:   3'- -CGCaugUGCGCGGGGGg----CAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 19225 0.66 0.733088
Target:  5'- aGUGgucCACgGCGcCCCCCCGggGCUCg- -3'
miRNA:   3'- -CGCau-GUG-CGC-GGGGGGCagCGAGag -5'
21658 3' -60.5 NC_004812.1 + 149169 0.66 0.742483
Target:  5'- gGCGagggGCG-GCGUCCCCgGUCGC-CUa -3'
miRNA:   3'- -CGCa---UGUgCGCGGGGGgCAGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 130108 0.66 0.723613
Target:  5'- gGCGUACuGC-CGCgCCgCGUCGCccagCUCg -3'
miRNA:   3'- -CGCAUG-UGcGCGgGGgGCAGCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 25577 0.66 0.733088
Target:  5'- cGCGgaagACgaaGCGCCgCCCCGccUCGUccuUCUCg -3'
miRNA:   3'- -CGCa---UGug-CGCGG-GGGGC--AGCG---AGAG- -5'
21658 3' -60.5 NC_004812.1 + 96541 0.66 0.742483
Target:  5'- cGCGUGCGCucCGCCCUgccgCUGUCGCg--- -3'
miRNA:   3'- -CGCAUGUGc-GCGGGG----GGCAGCGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.