miRNA display CGI


Results 21 - 40 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 78116 0.66 0.977884
Target:  5'- gGCCacgagAACCAgCuucGCCAGCGCca-GGCg -3'
miRNA:   3'- -CGGa----UUGGUgGu--CGGUUGUGuugCCG- -5'
21702 3' -52.4 NC_004812.1 + 65494 0.66 0.977884
Target:  5'- cGCCcccaAGCgACCccacGGCCGGCAgGcCGGCg -3'
miRNA:   3'- -CGGa---UUGgUGG----UCGGUUGUgUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 94777 0.66 0.9774
Target:  5'- cGCCcgcguCCACCcggagugGGCCcACGCGggcccccGCGGCg -3'
miRNA:   3'- -CGGauu--GGUGG-------UCGGuUGUGU-------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 50656 0.66 0.977884
Target:  5'- gGCCcGGCgACUcGCCGcC-CGACGGCg -3'
miRNA:   3'- -CGGaUUGgUGGuCGGUuGuGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 32134 0.66 0.977884
Target:  5'- gGCCggacGCCA-CGGCCGGgccccCGCcGCGGCg -3'
miRNA:   3'- -CGGau--UGGUgGUCGGUU-----GUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 57916 0.66 0.977884
Target:  5'- uCCUcgagGAgCGCCAGCCAguccucaaucuGCAgCuGCGGCg -3'
miRNA:   3'- cGGA----UUgGUGGUCGGU-----------UGU-GuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 28564 0.66 0.980188
Target:  5'- cGCCgcgauguucGGCCGgCAGCUGGCggACGACGuGCg -3'
miRNA:   3'- -CGGa--------UUGGUgGUCGGUUG--UGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 14219 0.66 0.975388
Target:  5'- gGCCccGCCcCCGGCgGcCACGGCGcGCc -3'
miRNA:   3'- -CGGauUGGuGGUCGgUuGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 145458 0.66 0.975388
Target:  5'- aCCUAcauUCGCCuGGCCGACgACGagcucuACGGCg -3'
miRNA:   3'- cGGAUu--GGUGG-UCGGUUG-UGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 108738 0.66 0.977884
Target:  5'- cGCU--ACUACCuGCUgcaGGCGCuGCGGCu -3'
miRNA:   3'- -CGGauUGGUGGuCGG---UUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 42733 0.66 0.977884
Target:  5'- gGCCgcgGCCACagaGGUCGcccGCAUGACGGg -3'
miRNA:   3'- -CGGau-UGGUGg--UCGGU---UGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 83469 0.66 0.979966
Target:  5'- cGCCUcgaaGGcCCGCUcggGGUCGucggggaGCGCGACGGCc -3'
miRNA:   3'- -CGGA----UU-GGUGG---UCGGU-------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 152262 0.66 0.975127
Target:  5'- cGCCgucGCCAUgAGCCGccgcuacgaccgcGCGCAGaagGGCu -3'
miRNA:   3'- -CGGau-UGGUGgUCGGU-------------UGUGUUg--CCG- -5'
21702 3' -52.4 NC_004812.1 + 44924 0.66 0.977884
Target:  5'- cGCC-AGCgGCCAcgucGCCGACgACGgggaGCGGUa -3'
miRNA:   3'- -CGGaUUGgUGGU----CGGUUG-UGU----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 80522 0.66 0.977884
Target:  5'- gGCCaaacACCGCgCAGCgCGGCuACAGCaGCa -3'
miRNA:   3'- -CGGau--UGGUG-GUCG-GUUG-UGUUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 98423 0.66 0.977884
Target:  5'- cGUCUcgGugCGgCGGCCG-CGgGGCGGCa -3'
miRNA:   3'- -CGGA--UugGUgGUCGGUuGUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 96552 0.66 0.977884
Target:  5'- cGCCcuGCCGCUgucgcGCgAGCACAGCGaGUa -3'
miRNA:   3'- -CGGauUGGUGGu----CGgUUGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 140637 0.66 0.986032
Target:  5'- gGUCggcGCCGCCGGCCGcgGgGCGucCGGUc -3'
miRNA:   3'- -CGGau-UGGUGGUCGGU--UgUGUu-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 151961 0.66 0.977884
Target:  5'- gGCgCUAcgagGCCGCCGGCgCGcccGCGCccguGugGGCg -3'
miRNA:   3'- -CG-GAU----UGGUGGUCG-GU---UGUG----UugCCG- -5'
21702 3' -52.4 NC_004812.1 + 39089 0.66 0.977884
Target:  5'- aGCCgcggcacGGCCACCgacGGCCGcguCGCggUGGUc -3'
miRNA:   3'- -CGGa------UUGGUGG---UCGGUu--GUGuuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.