miRNA display CGI

Results 1 - 20 of 1131 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	115451	0.66	0.975388
	Target:  5'- cGCCUGGCggcgCGCCGcugggcucGCCGcGCGCGuGCGGCc -3' miRNA:   3'- -CGGAUUG----GUGGU--------CGGU-UGUGU-UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	44924	0.66	0.977884
	Target:  5'- cGCC-AGCgGCCAcgucGCCGACgACGgggaGCGGUa -3' miRNA:   3'- -CGGaUUGgUGGU----CGGUUG-UGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	13362	0.66	0.975388
	Target:  5'- cGCC--ACCACCAGCUGcugcuugcuguGCACcucgaGGCg -3' miRNA:   3'- -CGGauUGGUGGUCGGU-----------UGUGuug--CCG- -5'
21702	3'	-52.4	NC_004812.1	+	134991	0.66	0.975388
	Target:  5'- gGCCgagcGCCGCCgGGCCGACucgccCGGUc -3' miRNA:   3'- -CGGau--UGGUGG-UCGGUUGuguu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	40866	0.66	0.977643
	Target:  5'- cGCCcGACCcuccuCCGGCCAuucauauACGCc-CGGCc -3' miRNA:   3'- -CGGaUUGGu----GGUCGGU-------UGUGuuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	85533	0.66	0.975388
	Target:  5'- cGCCUgcgGACCACCAacaCCAu--CcACGGCa -3' miRNA:   3'- -CGGA---UUGGUGGUc--GGUuguGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	34592	0.66	0.977884
	Target:  5'- aCCguAUgACCggGGCCAugucccccgaucGCACGACGGCg -3' miRNA:   3'- cGGauUGgUGG--UCGGU------------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	14219	0.66	0.975388
	Target:  5'- gGCCccGCCcCCGGCgGcCACGGCGcGCc -3' miRNA:   3'- -CGGauUGGuGGUCGgUuGUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	32134	0.66	0.977884
	Target:  5'- gGCCggacGCCA-CGGCCGGgccccCGCcGCGGCg -3' miRNA:   3'- -CGGau--UGGUgGUCGGUU-----GUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	39089	0.66	0.977884
	Target:  5'- aGCCgcggcacGGCCACCgacGGCCGcguCGCggUGGUc -3' miRNA:   3'- -CGGa------UUGGUGG---UCGGUu--GUGuuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	52199	0.66	0.977884
	Target:  5'- gGCCUugugcuccGugCGCUccauGGCCGACACcAgGGCc -3' miRNA:   3'- -CGGA--------UugGUGG----UCGGUUGUGuUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	93363	0.66	0.975388
	Target:  5'- cGCCUccucGACCcCCAGCaugugcguCAcCGCGACGGg -3' miRNA:   3'- -CGGA----UUGGuGGUCG--------GUuGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	138406	0.66	0.975388
	Target:  5'- gGCCU-ACUACCGcGUgGACGCGGggggcugcCGGCg -3' miRNA:   3'- -CGGAuUGGUGGU-CGgUUGUGUU--------GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	145458	0.66	0.975388
	Target:  5'- aCCUAcauUCGCCuGGCCGACgACGagcucuACGGCg -3' miRNA:   3'- cGGAUu--GGUGG-UCGGUUG-UGU------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	140637	0.66	0.986032
	Target:  5'- gGUCggcGCCGCCGGCCGcgGgGCGucCGGUc -3' miRNA:   3'- -CGGau-UGGUGGUCGGU--UgUGUu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	71919	0.66	0.975388
	Target:  5'- cGCCgcgGGCgCugCAGCggcgaggaCGGCGCGggGCGGCc -3' miRNA:   3'- -CGGa--UUG-GugGUCG--------GUUGUGU--UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	108738	0.66	0.977884
	Target:  5'- cGCU--ACUACCuGCUgcaGGCGCuGCGGCu -3' miRNA:   3'- -CGGauUGGUGGuCGG---UUGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152262	0.66	0.975127
	Target:  5'- cGCCgucGCCAUgAGCCGccgcuacgaccgcGCGCAGaagGGCu -3' miRNA:   3'- -CGGau-UGGUGgUCGGU-------------UGUGUUg--CCG- -5'
21702	3'	-52.4	NC_004812.1	+	9387	0.66	0.977884
	Target:  5'- gGCCacGCCcuauuuCCGGCCAACgcccuggaaacgACAACGcGCu -3' miRNA:   3'- -CGGauUGGu-----GGUCGGUUG------------UGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	42733	0.66	0.977884
	Target:  5'- gGCCgcgGCCACagaGGUCGcccGCAUGACGGg -3' miRNA:   3'- -CGGau-UGGUGg--UCGGU---UGUGUUGCCg -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home