miRNA display CGI


Results 1 - 20 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 94310 0.78 0.469826
Target:  5'- cGCUUggUCGCCGGCU-GCGCGGCGGUg -3'
miRNA:   3'- -CGGAuuGGUGGUCGGuUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 114824 0.79 0.4143
Target:  5'- gGUCUGGCCGCCcgagcGGCCGAgGCG-CGGCg -3'
miRNA:   3'- -CGGAUUGGUGG-----UCGGUUgUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 40288 0.79 0.423275
Target:  5'- cGCC--GCCGCCAGCagGGCgACAACGGCc -3'
miRNA:   3'- -CGGauUGGUGGUCGg-UUG-UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 69572 0.79 0.431451
Target:  5'- gGCCgcGCCG-CAGCCGccuccgaGCGCGACGGCg -3'
miRNA:   3'- -CGGauUGGUgGUCGGU-------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 152946 0.79 0.440643
Target:  5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3'
miRNA:   3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 126948 0.79 0.441569
Target:  5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3'
miRNA:   3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 127728 0.79 0.441569
Target:  5'- cGCCgcgGCC-CgCGGCCAGCGCAcgcGCGGCg -3'
miRNA:   3'- -CGGau-UGGuG-GUCGGUUGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 35062 0.79 0.450882
Target:  5'- uGCCgcgcGCCACCAGCCG-CGCGACGa- -3'
miRNA:   3'- -CGGau--UGGUGGUCGGUuGUGUUGCcg -5'
21702 3' -52.4 NC_004812.1 + 129253 0.79 0.460302
Target:  5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3'
miRNA:   3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 58949 0.8 0.3796
Target:  5'- cGCCUGGCCugCcgugaggcugggGGCCGAgAUGGCGGCg -3'
miRNA:   3'- -CGGAUUGGugG------------UCGGUUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 151460 0.81 0.362996
Target:  5'- gGCCcgGACCGCgGGCCGACGCcgccguccccgGGCGGCc -3'
miRNA:   3'- -CGGa-UUGGUGgUCGGUUGUG-----------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 139290 0.81 0.362996
Target:  5'- cGCCcccACCACCAcccccGCCAACGgGACGGCc -3'
miRNA:   3'- -CGGau-UGGUGGU-----CGGUUGUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 46895 0.87 0.149468
Target:  5'- cGCCUGcCCAgCCGGCCGccaGCGCGGCGGCg -3'
miRNA:   3'- -CGGAUuGGU-GGUCGGU---UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 129459 0.85 0.20371
Target:  5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3'
miRNA:   3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 64031 0.85 0.208929
Target:  5'- cGCC--GCCGCCAGCCAgGCgACGACGGCc -3'
miRNA:   3'- -CGGauUGGUGGUCGGU-UG-UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 107424 0.84 0.242706
Target:  5'- gGCCaGGcCCACCGGCC-GCGCGGCGGCc -3'
miRNA:   3'- -CGGaUU-GGUGGUCGGuUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 111759 0.83 0.274224
Target:  5'- uCCUGuACCACCGGCCcGCAUcggGACGGCg -3'
miRNA:   3'- cGGAU-UGGUGGUCGGuUGUG---UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 25333 0.82 0.308937
Target:  5'- cGCgUcGCCACCAGCCGGCGgugGGCGGCg -3'
miRNA:   3'- -CGgAuUGGUGGUCGGUUGUg--UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 67656 0.82 0.32298
Target:  5'- cCCUGGCCGCCGGCCGcgcccuccucgccAC-CGGCGGCc -3'
miRNA:   3'- cGGAUUGGUGGUCGGU-------------UGuGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 19009 0.82 0.323732
Target:  5'- gGCCcgcGGCCGCgGGCCGGCGCAgcgcggGCGGCa -3'
miRNA:   3'- -CGGa--UUGGUGgUCGGUUGUGU------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.