miRNA display CGI

Results 1 - 20 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	40	0.7	0.904588
	Target:  5'- -aCgcGCgGCgGGCCGcggGCGCGGCGGCg -3' miRNA:   3'- cgGauUGgUGgUCGGU---UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	362	0.77	0.558444
	Target:  5'- cCCUcacucucGGCCGCC-GCCGGCGCAucccGCGGCg -3' miRNA:   3'- cGGA-------UUGGUGGuCGGUUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	458	0.69	0.916854
	Target:  5'- aGCCcgGGCCGCCGGC--GCGCcuGCGuGCg -3' miRNA:   3'- -CGGa-UUGGUGGUCGguUGUGu-UGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	491	0.66	0.984984
	Target:  5'- cGCCUGcugcccgaacucacgGCCGCCgcGGCCGGgGCG--GGCc -3' miRNA:   3'- -CGGAU---------------UGGUGG--UCGGUUgUGUugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	552	0.68	0.947673
	Target:  5'- cGCCUc-CCGCC--CCGGCGCGcGCGGCc -3' miRNA:   3'- -CGGAuuGGUGGucGGUUGUGU-UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	809	0.66	0.984253
	Target:  5'- cGCCc-ACgGCCGGCCGGga-AGCGGUg -3' miRNA:   3'- -CGGauUGgUGGUCGGUUgugUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1004	0.66	0.984253
	Target:  5'- gGCCUGcccgGCCgggGCCGcGCCccCGCGAgGGCc -3' miRNA:   3'- -CGGAU----UGG---UGGU-CGGuuGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1134	0.72	0.784155
	Target:  5'- aGCC-GGCCGCCAGgCucCcCGGCGGCg -3' miRNA:   3'- -CGGaUUGGUGGUCgGuuGuGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1192	0.7	0.869702
	Target:  5'- cGCCgucGCCGCC-GCCAcCACGccCGGCc -3' miRNA:   3'- -CGGau-UGGUGGuCGGUuGUGUu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1237	0.67	0.959772
	Target:  5'- uCCUccCCGcCCGGgCGGCGCcGCGGCc -3' miRNA:   3'- cGGAuuGGU-GGUCgGUUGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1276	0.67	0.959772
	Target:  5'- cGCC-GGCCGCgGGCgGGCGgucCGAgGGCg -3' miRNA:   3'- -CGGaUUGGUGgUCGgUUGU---GUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1353	0.73	0.774668
	Target:  5'- cGCCgGAagGCCGGCUAugcaaacgccguGCGCGACGGCc -3' miRNA:   3'- -CGGaUUggUGGUCGGU------------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1440	0.79	0.441569
	Target:  5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3' miRNA:   3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1496	0.69	0.928125
	Target:  5'- gGCg-GAgCGCCGGCCGgcccgcgccgccGCGCGAgGGCa -3' miRNA:   3'- -CGgaUUgGUGGUCGGU------------UGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1656	0.68	0.955976
	Target:  5'- cGCCgcucccCCGuuGGCCGcgGCGCcGCGGCc -3' miRNA:   3'- -CGGauu---GGUggUCGGU--UGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1718	0.66	0.980188
	Target:  5'- cGCCagacuCCGcCCGGCCccGCGCGccuccGCGGCc -3' miRNA:   3'- -CGGauu--GGU-GGUCGGu-UGUGU-----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	1789	0.68	0.951945
	Target:  5'- gGCCgcuCCGCCccGCCGcaGCAUGGCGGa -3' miRNA:   3'- -CGGauuGGUGGu-CGGU--UGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	2024	0.7	0.891343
	Target:  5'- cGCCga--CGCCGGCgGGCcucgguCGGCGGCg -3' miRNA:   3'- -CGGauugGUGGUCGgUUGu-----GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	2076	0.66	0.986032
	Target:  5'- cGCCccccgcguCUACCAGUCcuCGgGGCGGCc -3' miRNA:   3'- -CGGauu-----GGUGGUCGGuuGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	2145	0.66	0.986032
	Target:  5'- gGCC---CCGCgGGCgGggcuCGCGGCGGCg -3' miRNA:   3'- -CGGauuGGUGgUCGgUu---GUGUUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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