miRNA display CGI


Results 1 - 20 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 115774 1.15 0.002537
Target:  5'- aGCCUAACCACCAGCCAACACAACGGCa -3'
miRNA:   3'- -CGGAUUGGUGGUCGGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 46895 0.87 0.149468
Target:  5'- cGCCUGcCCAgCCGGCCGccaGCGCGGCGGCg -3'
miRNA:   3'- -CGGAUuGGU-GGUCGGU---UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3951 0.85 0.20371
Target:  5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3'
miRNA:   3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 129459 0.85 0.20371
Target:  5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3'
miRNA:   3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 64031 0.85 0.208929
Target:  5'- cGCC--GCCGCCAGCCAgGCgACGACGGCc -3'
miRNA:   3'- -CGGauUGGUGGUCGGU-UG-UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 62059 0.84 0.230968
Target:  5'- aGCCccGCCACCAgggccGCCGACAgGGCGGCg -3'
miRNA:   3'- -CGGauUGGUGGU-----CGGUUGUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 107424 0.84 0.242706
Target:  5'- gGCCaGGcCCACCGGCC-GCGCGGCGGCc -3'
miRNA:   3'- -CGGaUU-GGUGGUCGGuUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 111759 0.83 0.274224
Target:  5'- uCCUGuACCACCGGCCcGCAUcggGACGGCg -3'
miRNA:   3'- cGGAU-UGGUGGUCGGuUGUG---UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 48926 0.82 0.293963
Target:  5'- cGCCUGgcccGCCACCAgcuuggcGCCGACGCGGCGaGCc -3'
miRNA:   3'- -CGGAU----UGGUGGU-------CGGUUGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 79854 0.82 0.294663
Target:  5'- gGCCcugGAgCACCcgacGGCCGACACGGCGGCc -3'
miRNA:   3'- -CGGa--UUgGUGG----UCGGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 105569 0.82 0.301735
Target:  5'- gGCCUGGCUGCCGGUCcGCGgCGAUGGCa -3'
miRNA:   3'- -CGGAUUGGUGGUCGGuUGU-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 25333 0.82 0.308937
Target:  5'- cGCgUcGCCACCAGCCGGCGgugGGCGGCg -3'
miRNA:   3'- -CGgAuUGGUGGUCGGUUGUg--UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 70924 0.82 0.316269
Target:  5'- gGUCUGGCCGCCAG-CGAUACAggcggGCGGCg -3'
miRNA:   3'- -CGGAUUGGUGGUCgGUUGUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 67656 0.82 0.32298
Target:  5'- cCCUGGCCGCCGGCCGcgcccuccucgccAC-CGGCGGCc -3'
miRNA:   3'- cGGAUUGGUGGUCGGU-------------UGuGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 19009 0.82 0.323732
Target:  5'- gGCCcgcGGCCGCgGGCCGGCGCAgcgcggGCGGCa -3'
miRNA:   3'- -CGGa--UUGGUGgUCGGUUGUGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 40796 0.81 0.331325
Target:  5'- gGCCcGGCCGCCucGCCu-CACAACGGCu -3'
miRNA:   3'- -CGGaUUGGUGGu-CGGuuGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 128043 0.81 0.346902
Target:  5'- cGCC-AGCUGCCGGCCgAACAUcGCGGCg -3'
miRNA:   3'- -CGGaUUGGUGGUCGG-UUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 56639 0.81 0.354884
Target:  5'- uGCCUGGCC-CCcGCCGGCACGGCccaccGGCa -3'
miRNA:   3'- -CGGAUUGGuGGuCGGUUGUGUUG-----CCG- -5'
21702 3' -52.4 NC_004812.1 + 111312 0.81 0.354884
Target:  5'- gGCCUGcCCGCCAacGCCAGucugccCGCGGCGGCg -3'
miRNA:   3'- -CGGAUuGGUGGU--CGGUU------GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 139290 0.81 0.362996
Target:  5'- cGCCcccACCACCAcccccGCCAACGgGACGGCc -3'
miRNA:   3'- -CGGau-UGGUGGU-----CGGUUGUgUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.