miRNA display CGI


Results 41 - 60 of 1131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 60409 0.66 0.984984
Target:  5'- cGCCcgcGCgACCGcGuCCAcguugcggguucggaGCGCGACGGCg -3'
miRNA:   3'- -CGGau-UGgUGGU-C-GGU---------------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 491 0.66 0.984984
Target:  5'- cGCCUGcugcccgaacucacgGCCGCCgcGGCCGGgGCG--GGCc -3'
miRNA:   3'- -CGGAU---------------UGGUGG--UCGGUUgUGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 31392 0.66 0.984984
Target:  5'- cGCCUGcugcccgaacucacgGCCGCCgcGGCCGGgGCG--GGCc -3'
miRNA:   3'- -CGGAU---------------UGGUGG--UCGGUUgUGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 108479 0.66 0.984984
Target:  5'- gGCgCUGACggucgcggucaacggCGCCAGCgcccgCAcggggcGCACGGCGGCg -3'
miRNA:   3'- -CG-GAUUG---------------GUGGUCG-----GU------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 71846 0.66 0.984984
Target:  5'- gGCCgggcGGCCGCCcGCaCGauccccugcaggagcGCGCGcACGGCg -3'
miRNA:   3'- -CGGa---UUGGUGGuCG-GU---------------UGUGU-UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 126513 0.66 0.984253
Target:  5'- gGCCUGcccgGCCgggGCCGcGCCccCGCGAgGGCc -3'
miRNA:   3'- -CGGAU----UGG---UGGU-CGGuuGUGUUgCCG- -5'
21702 3' -52.4 NC_004812.1 + 63616 0.66 0.984253
Target:  5'- gGCCcgguCCugCGGCagCAGCACGACGa- -3'
miRNA:   3'- -CGGauu-GGugGUCG--GUUGUGUUGCcg -5'
21702 3' -52.4 NC_004812.1 + 57413 0.66 0.984253
Target:  5'- aCCUgGACCggggGCCGGgCGGCACcACGGg -3'
miRNA:   3'- cGGA-UUGG----UGGUCgGUUGUGuUGCCg -5'
21702 3' -52.4 NC_004812.1 + 115402 0.66 0.984253
Target:  5'- cGCgUAgucGCCGCCccGCgCGGCGCGccgaccggcGCGGCg -3'
miRNA:   3'- -CGgAU---UGGUGGu-CG-GUUGUGU---------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 98629 0.66 0.984253
Target:  5'- gGCCgucgcGGCCGCgCugcGCCcgGGCGCGACGcGCg -3'
miRNA:   3'- -CGGa----UUGGUG-Gu--CGG--UUGUGUUGC-CG- -5'
21702 3' -52.4 NC_004812.1 + 23772 0.66 0.984253
Target:  5'- aCCgcGCgCGCuCGGCCAuccgACGCGugcGCGGCu -3'
miRNA:   3'- cGGauUG-GUG-GUCGGU----UGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 75473 0.66 0.984253
Target:  5'- gGUCUGcuccGCgGCCgcGGCCAGgucCAGCGGCa -3'
miRNA:   3'- -CGGAU----UGgUGG--UCGGUUgu-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 151734 0.66 0.984253
Target:  5'- gGCCgggcgcgacGCCACgGGCCGcuuCACGGCcGCg -3'
miRNA:   3'- -CGGau-------UGGUGgUCGGUu--GUGUUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 53394 0.66 0.984253
Target:  5'- cGCCUGaaccuGCCGCUcGUCcGCAgcGCGGCc -3'
miRNA:   3'- -CGGAU-----UGGUGGuCGGuUGUguUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 51258 0.66 0.984253
Target:  5'- uCCgcgGGCCACCgGGCCcucgucGCGCGagcAUGGCg -3'
miRNA:   3'- cGGa--UUGGUGG-UCGGu-----UGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 102181 0.66 0.984253
Target:  5'- gGCCc-GCgGCgGGCCcaucGACACccGGCGGCg -3'
miRNA:   3'- -CGGauUGgUGgUCGG----UUGUG--UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 85609 0.66 0.984253
Target:  5'- cCCUGGCgGCCcuggcGGCCGACccGCGggccccGCGGUg -3'
miRNA:   3'- cGGAUUGgUGG-----UCGGUUG--UGU------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 47019 0.66 0.984253
Target:  5'- cGCCaUGGCCACCcGauaGACggGCAGCGGg -3'
miRNA:   3'- -CGG-AUUGGUGGuCgg-UUG--UGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 809 0.66 0.984253
Target:  5'- cGCCc-ACgGCCGGCCGGga-AGCGGUg -3'
miRNA:   3'- -CGGauUGgUGGUCGGUUgugUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 61855 0.66 0.984253
Target:  5'- gGCg-AACuCGgCGGCCAGCGCc-CGGCg -3'
miRNA:   3'- -CGgaUUG-GUgGUCGGUUGUGuuGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.