miRNA display CGI


Results 21 - 40 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 2219 0.72 0.820584
Target:  5'- cGCCgcgGCC-CgCGGcCCAGCGCAcgcGCGGCg -3'
miRNA:   3'- -CGGau-UGGuG-GUC-GGUUGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2421 0.69 0.910845
Target:  5'- gGCC-AGCCcCCAGCgcGCGCAggcGCGGUg -3'
miRNA:   3'- -CGGaUUGGuGGUCGguUGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2457 0.73 0.771795
Target:  5'- cGCCUcGCCGCgGcggaaguccggggcGCCGGCGgCGGCGGCc -3'
miRNA:   3'- -CGGAuUGGUGgU--------------CGGUUGU-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2525 0.69 0.916854
Target:  5'- gGCCgucGAgCGCgggCAGCaCGGCGCGGCGGUa -3'
miRNA:   3'- -CGGa--UUgGUG---GUCG-GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2584 0.72 0.7935
Target:  5'- cGCCUccgacGCCGCC-GCCG-C-CGACGGCa -3'
miRNA:   3'- -CGGAu----UGGUGGuCGGUuGuGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2621 0.69 0.928125
Target:  5'- cGUUggcGCCG-CGGCCcaGGCGCGGCGGCg -3'
miRNA:   3'- -CGGau-UGGUgGUCGG--UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2699 0.76 0.59051
Target:  5'- cGCCgGGCCcgaagacgcgGCCggaGGCCAGCACGgcGCGGCg -3'
miRNA:   3'- -CGGaUUGG----------UGG---UCGGUUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2877 0.66 0.977884
Target:  5'- ---gAGgCGgCGGCCGGCGgCGGCGGCg -3'
miRNA:   3'- cggaUUgGUgGUCGGUUGU-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2968 0.67 0.963335
Target:  5'- cGCCcucuccCCGCCcGCC--CGCAugGGCg -3'
miRNA:   3'- -CGGauu---GGUGGuCGGuuGUGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 3070 0.71 0.846055
Target:  5'- aGCCUcGCCGgUGGgCGGCgggACGACGGCg -3'
miRNA:   3'- -CGGAuUGGUgGUCgGUUG---UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3118 0.66 0.982308
Target:  5'- cGCCgAGCUcCUcGCCGG-GCAGCGGCg -3'
miRNA:   3'- -CGGaUUGGuGGuCGGUUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3183 0.69 0.910845
Target:  5'- aCCUGGCgCAuCCAGgCGGCGgcGCGGCg -3'
miRNA:   3'- cGGAUUG-GU-GGUCgGUUGUguUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3253 0.68 0.947673
Target:  5'- aGCCgGGCUcggGCgGGCCGcaGCGCG-CGGCg -3'
miRNA:   3'- -CGGaUUGG---UGgUCGGU--UGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3334 0.68 0.955976
Target:  5'- gGCCcgaggGGCCGCCGcGCCccGCGCccCGGCc -3'
miRNA:   3'- -CGGa----UUGGUGGU-CGGu-UGUGuuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3421 0.67 0.959772
Target:  5'- gGCUgGGCC-CCGG-CGGCACG-CGGCg -3'
miRNA:   3'- -CGGaUUGGuGGUCgGUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3476 0.7 0.877146
Target:  5'- cGCCccGCCGCCgAGCCccccGCGCccgcccccggGGCGGCg -3'
miRNA:   3'- -CGGauUGGUGG-UCGGu---UGUG----------UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3547 0.73 0.752357
Target:  5'- cGCCgGGCCggcucuucuugcgcGCCGGCgGGCagGCGGCGGCg -3'
miRNA:   3'- -CGGaUUGG--------------UGGUCGgUUG--UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3624 0.73 0.755303
Target:  5'- cGCUU-GCgCGCCGGCgGGCGCG-CGGCg -3'
miRNA:   3'- -CGGAuUG-GUGGUCGgUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3745 0.79 0.460302
Target:  5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3'
miRNA:   3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 3812 0.69 0.928125
Target:  5'- gGCCUcggcGCCGCCGGC-GACGCGGaGGUc -3'
miRNA:   3'- -CGGAu---UGGUGGUCGgUUGUGUUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.