Results 21 - 40 of 1131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21702 | 3' | -52.4 | NC_004812.1 | + | 94310 | 0.78 | 0.469826 |
Target: 5'- cGCUUggUCGCCGGCU-GCGCGGCGGUg -3' miRNA: 3'- -CGGAuuGGUGGUCGGuUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 129253 | 0.79 | 0.460302 |
Target: 5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3' miRNA: 3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 19009 | 0.82 | 0.323732 |
Target: 5'- gGCCcgcGGCCGCgGGCCGGCGCAgcgcggGCGGCa -3' miRNA: 3'- -CGGa--UUGGUGgUCGGUUGUGU------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 67656 | 0.82 | 0.32298 |
Target: 5'- cCCUGGCCGCCGGCCGcgcccuccucgccAC-CGGCGGCc -3' miRNA: 3'- cGGAUUGGUGGUCGGU-------------UGuGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 25333 | 0.82 | 0.308937 |
Target: 5'- cGCgUcGCCACCAGCCGGCGgugGGCGGCg -3' miRNA: 3'- -CGgAuUGGUGGUCGGUUGUg--UUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 111759 | 0.83 | 0.274224 |
Target: 5'- uCCUGuACCACCGGCCcGCAUcggGACGGCg -3' miRNA: 3'- cGGAU-UGGUGGUCGGuUGUG---UUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 107424 | 0.84 | 0.242706 |
Target: 5'- gGCCaGGcCCACCGGCC-GCGCGGCGGCc -3' miRNA: 3'- -CGGaUU-GGUGGUCGGuUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 64031 | 0.85 | 0.208929 |
Target: 5'- cGCC--GCCGCCAGCCAgGCgACGACGGCc -3' miRNA: 3'- -CGGauUGGUGGUCGGU-UG-UGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 129459 | 0.85 | 0.20371 |
Target: 5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3' miRNA: 3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 46895 | 0.87 | 0.149468 |
Target: 5'- cGCCUGcCCAgCCGGCCGccaGCGCGGCGGCg -3' miRNA: 3'- -CGGAUuGGU-GGUCGGU---UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 139290 | 0.81 | 0.362996 |
Target: 5'- cGCCcccACCACCAcccccGCCAACGgGACGGCc -3' miRNA: 3'- -CGGau-UGGUGGU-----CGGUUGUgUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 151460 | 0.81 | 0.362996 |
Target: 5'- gGCCcgGACCGCgGGCCGACGCcgccguccccgGGCGGCc -3' miRNA: 3'- -CGGa-UUGGUGgUCGGUUGUG-----------UUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 35062 | 0.79 | 0.450882 |
Target: 5'- uGCCgcgcGCCACCAGCCG-CGCGACGa- -3' miRNA: 3'- -CGGau--UGGUGGUCGGUuGUGUUGCcg -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 127728 | 0.79 | 0.441569 |
Target: 5'- cGCCgcgGCC-CgCGGCCAGCGCAcgcGCGGCg -3' miRNA: 3'- -CGGau-UGGuG-GUCGGUUGUGU---UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 126948 | 0.79 | 0.441569 |
Target: 5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3' miRNA: 3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 152946 | 0.79 | 0.440643 |
Target: 5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3' miRNA: 3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 69572 | 0.79 | 0.431451 |
Target: 5'- gGCCgcGCCG-CAGCCGccuccgaGCGCGACGGCg -3' miRNA: 3'- -CGGauUGGUgGUCGGU-------UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 40288 | 0.79 | 0.423275 |
Target: 5'- cGCC--GCCGCCAGCagGGCgACAACGGCc -3' miRNA: 3'- -CGGauUGGUGGUCGg-UUG-UGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 114824 | 0.79 | 0.4143 |
Target: 5'- gGUCUGGCCGCCcgagcGGCCGAgGCG-CGGCg -3' miRNA: 3'- -CGGAUUGGUGG-----UCGGUUgUGUuGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 58949 | 0.8 | 0.3796 |
Target: 5'- cGCCUGGCCugCcgugaggcugggGGCCGAgAUGGCGGCg -3' miRNA: 3'- -CGGAUUGGugG------------UCGGUUgUGUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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