miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 5011 0.66 0.698341
Target:  5'- gCGGgCGggGgcgGcAGGUGGGGCGGCaggCGGg -3'
miRNA:   3'- -GUCgGCaaCa--C-UCCGCUCCGCCG---GCC- -5'
21702 5' -60.9 NC_004812.1 + 737 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 76721 0.66 0.717554
Target:  5'- aAGuuGggGUGgAGGCcggaGAGcGCGGCCGc -3'
miRNA:   3'- gUCggCaaCAC-UCCG----CUC-CGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 138466 0.66 0.698341
Target:  5'- gGGCUGUc--GGGGCGGGGC-GCCGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGcCGGCc -5'
21702 5' -60.9 NC_004812.1 + 54660 0.66 0.727064
Target:  5'- -cGCCGccGcGGGGCccaGCGGCCGGg -3'
miRNA:   3'- guCGGCaaCaCUCCGcucCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 143544 0.66 0.698341
Target:  5'- -cGCCGUgaacGAGGCGGcccuGGCGcGCCuGGg -3'
miRNA:   3'- guCGGCAaca-CUCCGCU----CCGC-CGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 92901 0.66 0.717554
Target:  5'- gCAGCgCGUguggGUcGAGGauccCGAGGCGGaggCGGg -3'
miRNA:   3'- -GUCG-GCAa---CA-CUCC----GCUCCGCCg--GCC- -5'
21702 5' -60.9 NC_004812.1 + 37516 0.66 0.727064
Target:  5'- -uGCgUGUUGUGGaGC-AGGCGGCCGu -3'
miRNA:   3'- guCG-GCAACACUcCGcUCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 19151 0.66 0.698341
Target:  5'- -cGCCGcgG-GGGGCGcGGCGGCgGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCuCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 49 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 71205 0.66 0.727064
Target:  5'- gGGCCGcgccagGcGGCGAgcgGGCGGCCGc -3'
miRNA:   3'- gUCGGCaaca--CuCCGCU---CCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 117635 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 154787 0.66 0.698341
Target:  5'- gAGgaGggGggaggaGAGGCGAGGCGcgcaGCCGGg -3'
miRNA:   3'- gUCggCaaCa-----CUCCGCUCCGC----CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 62139 0.66 0.688653
Target:  5'- aGGCCGgaucgGcGGCGcGGGCGGCCu- -3'
miRNA:   3'- gUCGGCaaca-CuCCGC-UCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 75797 0.66 0.727064
Target:  5'- cCAGUCGa--UGcGGCG-GGCGGCCGc -3'
miRNA:   3'- -GUCGGCaacACuCCGCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 128527 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 86487 0.66 0.717554
Target:  5'- uGGUCGUUGacgGAGccgcuGCGGGcccccgggaaGCGGCCGGu -3'
miRNA:   3'- gUCGGCAACa--CUC-----CGCUC----------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 54608 0.66 0.736497
Target:  5'- uGGCCGc---GGGGaCGGGcGgGGCCGGa -3'
miRNA:   3'- gUCGGCaacaCUCC-GCUC-CgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 25866 0.66 0.727064
Target:  5'- gGGCC----UGGGGuUGGcGGCGGCCGGc -3'
miRNA:   3'- gUCGGcaacACUCC-GCU-CCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 5970 0.66 0.688653
Target:  5'- aGGCCGcgGgGGGGCGAGucGCGgggugguaggcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCUC--CGC-----------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.