miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 121660 0.66 0.707977
Target:  5'- gCGGCCuGcgGcgGAGGCGGagcGGCGGgCGGc -3'
miRNA:   3'- -GUCGG-CaaCa-CUCCGCU---CCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 121790 0.66 0.707977
Target:  5'- gGGCCGcUUGggcccucgcguggcgGGGGCggccucgGAGGCggaGGCCGGg -3'
miRNA:   3'- gUCGGC-AACa--------------CUCCG-------CUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 737 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 154787 0.66 0.698341
Target:  5'- gAGgaGggGggaggaGAGGCGAGGCGcgcaGCCGGg -3'
miRNA:   3'- gUCggCaaCa-----CUCCGCUCCGC----CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 143544 0.66 0.698341
Target:  5'- -cGCCGUgaacGAGGCGGcccuGGCGcGCCuGGg -3'
miRNA:   3'- guCGGCAaca-CUCCGCU----CCGC-CGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 128527 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 5011 0.66 0.698341
Target:  5'- gCGGgCGggGgcgGcAGGUGGGGCGGCaggCGGg -3'
miRNA:   3'- -GUCgGCaaCa--C-UCCGCUCCGCCG---GCC- -5'
21702 5' -60.9 NC_004812.1 + 58953 0.66 0.707977
Target:  5'- uGGCCuGccGUGAGGCu-GGgGGCCGa -3'
miRNA:   3'- gUCGG-CaaCACUCCGcuCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 138466 0.66 0.698341
Target:  5'- gGGCUGUc--GGGGCGGGGC-GCCGc -3'
miRNA:   3'- gUCGGCAacaCUCCGCUCCGcCGGCc -5'
21702 5' -60.9 NC_004812.1 + 49 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 5970 0.66 0.688653
Target:  5'- aGGCCGcgGgGGGGCGAGucGCGgggugguaggcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCUC--CGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 19151 0.66 0.698341
Target:  5'- -cGCCGcgG-GGGGCGcGGCGGCgGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCuCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 62139 0.66 0.688653
Target:  5'- aGGCCGgaucgGcGGCGcGGGCGGCCu- -3'
miRNA:   3'- gUCGGCaaca-CuCCGC-UCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 7510 0.66 0.705092
Target:  5'- gGGCCGgagcgaaaggaggGAGGgGGGGCGGCgaugcgCGGg -3'
miRNA:   3'- gUCGGCaaca---------CUCCgCUCCGCCG------GCC- -5'
21702 5' -60.9 NC_004812.1 + 129077 0.66 0.698341
Target:  5'- -cGCCGgcGggcAGGCGGcGGCGGCggCGGg -3'
miRNA:   3'- guCGGCaaCac-UCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 117635 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 26019 0.66 0.745848
Target:  5'- -uGCCGacgcggacgGcGAcGGCGGGGCcggGGCCGGg -3'
miRNA:   3'- guCGGCaa-------CaCU-CCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 9001 0.66 0.698341
Target:  5'- -uGCUGUUGUG-GGCGcuuGG-GGCCGu -3'
miRNA:   3'- guCGGCAACACuCCGCu--CCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 31987 0.66 0.684766
Target:  5'- cCGGCCGcgGcagguccgccacgGAGGCGGGGCcgaaccGGCCGc -3'
miRNA:   3'- -GUCGGCaaCa------------CUCCGCUCCG------CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 125165 0.66 0.698341
Target:  5'- -cGCCGggGcggGAGGCGGGaG-GGcCCGGg -3'
miRNA:   3'- guCGGCaaCa--CUCCGCUC-CgCC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.