miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 122365 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 130438 0.73 0.31595
Target:  5'- gCGGCCcgcg-GAGGCGgcgcuggaGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGcaacaCUCCGC--------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121882 0.73 0.32295
Target:  5'- gGGgCGggGccUGGGGCGGGGCcgcaGGCCGGg -3'
miRNA:   3'- gUCgGCaaC--ACUCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 7639 0.73 0.32295
Target:  5'- gCGGCCGggGUcGGGGCGcgaagcugcGGGCccgcgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCA-CUCCGC---------UCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 98488 0.73 0.337296
Target:  5'- gGGUCGUggGUGGGGCGgcgcgGGGCG-CCGGg -3'
miRNA:   3'- gUCGGCAa-CACUCCGC-----UCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 78722 0.73 0.337296
Target:  5'- uCGGCCGgc-UGGGGUcgGGGGuCGGCCGGc -3'
miRNA:   3'- -GUCGGCaacACUCCG--CUCC-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 78800 0.73 0.337296
Target:  5'- uCGGCCGgc-UGGGGUcgGGGGuCGGCCGGc -3'
miRNA:   3'- -GUCGGCaacACUCCG--CUCC-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 46643 0.73 0.344641
Target:  5'- aGGUCGaUGuUGGGGUGGGGUccguGGCCGGg -3'
miRNA:   3'- gUCGGCaAC-ACUCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 141462 0.73 0.344641
Target:  5'- aGGUCGUgcgGggagcccccGAGGCGAcGCGGCCGGa -3'
miRNA:   3'- gUCGGCAa--Ca--------CUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 84954 0.74 0.289098
Target:  5'- uGGCUGggG-GAGGCGuGG-GGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCuCCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 123548 0.74 0.282671
Target:  5'- gGGCCGggcGUcccGGGGCGAGcgaggcggcGCGGCCGGg -3'
miRNA:   3'- gUCGGCaa-CA---CUCCGCUC---------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 79616 0.74 0.282671
Target:  5'- aCGGCCGcgGUGAgGGCGGccGUGGCCGGc -3'
miRNA:   3'- -GUCGGCaaCACU-CCGCUc-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 107356 0.85 0.056788
Target:  5'- uCGGCCGUUG-GGGGCGGGGggaUGGCCGGa -3'
miRNA:   3'- -GUCGGCAACaCUCCGCUCC---GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 117611 0.81 0.107787
Target:  5'- gGGCCGggG-GAGGgGGGGCGGCgCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCgCUCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 818 0.78 0.168497
Target:  5'- cCGGCCGggGguccugGGGGUccGGGGUGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa-----CUCCG--CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 82861 0.77 0.181209
Target:  5'- gAGCgCGggGUGAGGUGguugaGGGCGGCCGa -3'
miRNA:   3'- gUCG-GCaaCACUCCGC-----UCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 8190 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 143864 0.76 0.218805
Target:  5'- aCGGCCGUguguucgcgggggUG-GGGGUGGGGCGGUgGGg -3'
miRNA:   3'- -GUCGGCA-------------ACaCUCCGCUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 129025 0.75 0.264071
Target:  5'- gGGCCGgcGgccccgGGGGCGGGGCcgcggcgccgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCUCCG----------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155859 0.75 0.264071
Target:  5'- -cGCCGg---GAGGCGAGGCGcGCgCGGc -3'
miRNA:   3'- guCGGCaacaCUCCGCUCCGC-CG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.