miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 115809 1.1 0.001005
Target:  5'- gCAGCCGUUGUGAGGCGAGGCGGCCGGg -3'
miRNA:   3'- -GUCGGCAACACUCCGCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 107356 0.85 0.056788
Target:  5'- uCGGCCGUUG-GGGGCGGGGggaUGGCCGGa -3'
miRNA:   3'- -GUCGGCAACaCUCCGCUCC---GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 148512 0.81 0.107787
Target:  5'- gGGCCGggG-GAGGgGGGGCGGCgCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCgCUCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 117611 0.81 0.107787
Target:  5'- gGGCCGggG-GAGGgGGGGCGGCgCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCgCUCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 91116 0.78 0.15659
Target:  5'- cCGGCCGUgggGUcgcuugGGGGCGGGGcCGGUCGGg -3'
miRNA:   3'- -GUCGGCAa--CA------CUCCGCUCC-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 818 0.78 0.168497
Target:  5'- cCGGCCGggGguccugGGGGUccGGGGUGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa-----CUCCG--CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 31719 0.78 0.168497
Target:  5'- cCGGCCGggGguccugGGGGUccGGGGUGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa-----CUCCG--CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 82861 0.77 0.181209
Target:  5'- gAGCgCGggGUGAGGUGguugaGGGCGGCCGa -3'
miRNA:   3'- gUCG-GCaaCACUCCGC-----UCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 59621 0.77 0.185631
Target:  5'- aGGgCGUggggGUGGGGCGGGaGCGGCCGcGg -3'
miRNA:   3'- gUCgGCAa---CACUCCGCUC-CGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 147502 0.77 0.190149
Target:  5'- gCGGCgaGggG-GAcGGCGAGGCGGCCGGc -3'
miRNA:   3'- -GUCGg-CaaCaCU-CCGCUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 8190 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 39091 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 143864 0.76 0.218805
Target:  5'- aCGGCCGUguguucgcgggggUG-GGGGUGGGGCGGUgGGg -3'
miRNA:   3'- -GUCGGCA-------------ACaCUCCGCUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 142400 0.76 0.229863
Target:  5'- -cGCCGggGgcGGGGcCGAGGaCGGCCGGa -3'
miRNA:   3'- guCGGCaaCa-CUCC-GCUCC-GCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 87057 0.75 0.24083
Target:  5'- gCGGCCGgcgccgcgGgcaGGGGCGcggggGGGCGGCCGGa -3'
miRNA:   3'- -GUCGGCaa------Ca--CUCCGC-----UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 30351 0.75 0.264071
Target:  5'- -cGCCGg---GAGGCGAGGCGcGCgCGGc -3'
miRNA:   3'- guCGGCaacaCUCCGCUCCGC-CG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 3517 0.75 0.264071
Target:  5'- gGGCCGgcGgccccgGGGGCGGGGCcgcggcgccgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCUCCG----------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155859 0.75 0.264071
Target:  5'- -cGCCGg---GAGGCGAGGCGcGCgCGGc -3'
miRNA:   3'- guCGGCaacaCUCCGCUCCGC-CG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 129025 0.75 0.264071
Target:  5'- gGGCCGgcGgccccgGGGGCGGGGCcgcggcgccgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCUCCG----------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 128678 0.74 0.276358
Target:  5'- uGGCCGgcGgucuuccggGAGGCGGGGCGcCCGGu -3'
miRNA:   3'- gUCGGCaaCa--------CUCCGCUCCGCcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.