miRNA display CGI


Results 1 - 20 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 49 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 737 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 818 0.78 0.168497
Target:  5'- cCGGCCGggGguccugGGGGUccGGGGUGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa-----CUCCG--CUCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 1425 0.71 0.432782
Target:  5'- gCGGCCGcgGggaGGGGcCGGGGCcgcgagGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCa--CUCC-GCUCCG------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 1972 0.66 0.688653
Target:  5'- -cGCCGggGggagGGGGggaGGGGUGGCgGGu -3'
miRNA:   3'- guCGGCaaCa---CUCCg--CUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 2648 0.68 0.600428
Target:  5'- gCGGCgCGUccggGUaGAGGCGcgcgcAGGCGGCCu- -3'
miRNA:   3'- -GUCG-GCAa---CA-CUCCGC-----UCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 2856 0.66 0.745848
Target:  5'- gGGCaCGgcGUccacgacgacGAGGC--GGCGGCCGGc -3'
miRNA:   3'- gUCG-GCaaCA----------CUCCGcuCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 3018 0.66 0.698341
Target:  5'- gCGGCCG-UGUcGGGCccgcaGAGGCGGuuGc -3'
miRNA:   3'- -GUCGGCaACAcUCCG-----CUCCGCCggCc -5'
21702 5' -60.9 NC_004812.1 + 3211 0.66 0.685738
Target:  5'- gCAGCgGgcccGAGGCGcgcggcgggccgaaGGcGCGGCCGGa -3'
miRNA:   3'- -GUCGgCaacaCUCCGC--------------UC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 3517 0.75 0.264071
Target:  5'- gGGCCGgcGgccccgGGGGCGGGGCcgcggcgccgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCUCCG----------CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 3569 0.66 0.698341
Target:  5'- -cGCCGgcGggcAGGCGGcGGCGGCggCGGg -3'
miRNA:   3'- guCGGCaaCac-UCCGCU-CCGCCG--GCC- -5'
21702 5' -60.9 NC_004812.1 + 4026 0.68 0.588688
Target:  5'- aGGCCGUgaggcacucgGcGGCGGcGGCGGCCGcGg -3'
miRNA:   3'- gUCGGCAaca-------CuCCGCU-CCGCCGGC-C- -5'
21702 5' -60.9 NC_004812.1 + 4623 0.68 0.620058
Target:  5'- uGGCCcuua-GGGGCGGGGgGGCgGGa -3'
miRNA:   3'- gUCGGcaacaCUCCGCUCCgCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 4779 0.68 0.571161
Target:  5'- gCGGUgGggGagGGGGCGGGGCgagGGCUGGu -3'
miRNA:   3'- -GUCGgCaaCa-CUCCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4930 0.73 0.31595
Target:  5'- gCGGCCcgcg-GAGGCGgcgcuggaGGGCGGCCGGc -3'
miRNA:   3'- -GUCGGcaacaCUCCGC--------UCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 4967 0.72 0.391086
Target:  5'- gCGGCCGgcG-GcGGCGAGGCGGgggcgacggguCCGGg -3'
miRNA:   3'- -GUCGGCaaCaCuCCGCUCCGCC-----------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 5011 0.66 0.698341
Target:  5'- gCGGgCGggGgcgGcAGGUGGGGCGGCaggCGGg -3'
miRNA:   3'- -GUCgGCaaCa--C-UCCGCUCCGCCG---GCC- -5'
21702 5' -60.9 NC_004812.1 + 5095 0.68 0.600428
Target:  5'- cCGGCCGgg--GAGGCGGGGgagucuggGGuCCGGg -3'
miRNA:   3'- -GUCGGCaacaCUCCGCUCCg-------CC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 5620 0.7 0.476954
Target:  5'- gGGCCG----GAGGCGGcucGGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCU---CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 5879 0.68 0.587712
Target:  5'- gGGCCGg---GGGGCGcGGGCGcgggcucaggggccGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGC-UCCGC--------------CGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.