miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 37427 0.66 0.717554
Target:  5'- gAGCaGggG-GGGGCGGGG-GGCCGa -3'
miRNA:   3'- gUCGgCaaCaCUCCGCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 70096 0.66 0.717554
Target:  5'- gCAGCCGaUGUucagcAGG-GAGGCG-CCGGg -3'
miRNA:   3'- -GUCGGCaACAc----UCCgCUCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 86487 0.66 0.717554
Target:  5'- uGGUCGUUGacgGAGccgcuGCGGGcccccgggaaGCGGCCGGu -3'
miRNA:   3'- gUCGGCAACa--CUC-----CGCUC----------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 76721 0.66 0.717554
Target:  5'- aAGuuGggGUGgAGGCcggaGAGcGCGGCCGc -3'
miRNA:   3'- gUCggCaaCAC-UCCG----CUC-CGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 127480 0.66 0.717554
Target:  5'- -cGCCGggGggagGGGGggaGGGGUGGgCGGg -3'
miRNA:   3'- guCGGCaaCa---CUCCg--CUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 92901 0.66 0.717554
Target:  5'- gCAGCgCGUguggGUcGAGGauccCGAGGCGGaggCGGg -3'
miRNA:   3'- -GUCG-GCAa---CA-CUCC----GCUCCGCCg--GCC- -5'
21702 5' -60.9 NC_004812.1 + 133904 0.66 0.717554
Target:  5'- uCGGCCGUgGUaaccccGGGCGGGGgGGaCgCGGg -3'
miRNA:   3'- -GUCGGCAaCAc-----UCCGCUCCgCC-G-GCC- -5'
21702 5' -60.9 NC_004812.1 + 6526 0.66 0.717554
Target:  5'- gAGCaGggG-GGGGCGGGG-GGCCGa -3'
miRNA:   3'- gUCGgCaaCaCUCCGCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 82356 0.66 0.716599
Target:  5'- gCGGCCGggGcGAGGCGuaccugcGGGCGcGCgGa -3'
miRNA:   3'- -GUCGGCaaCaCUCCGC-------UCCGC-CGgCc -5'
21702 5' -60.9 NC_004812.1 + 136695 0.66 0.707977
Target:  5'- -cGCCGgcgcgGUGGcGGCGgcgcGGGCcGCCGGu -3'
miRNA:   3'- guCGGCaa---CACU-CCGC----UCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 148536 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 21067 0.66 0.707977
Target:  5'- uGGCCGggGUccGAGucCGcGGCGGCCGa -3'
miRNA:   3'- gUCGGCaaCA--CUCc-GCuCCGCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 76175 0.66 0.707977
Target:  5'- gCGGgCGgc-UGGGGUG-GGCGGCgGGg -3'
miRNA:   3'- -GUCgGCaacACUCCGCuCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 30950 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 31638 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 58953 0.66 0.707977
Target:  5'- uGGCCuGccGUGAGGCu-GGgGGCCGa -3'
miRNA:   3'- gUCGG-CaaCACUCCGcuCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 117635 0.66 0.707977
Target:  5'- nGGCCGccggGcGcGGCGGGGUcgcgGGCCGGc -3'
miRNA:   3'- gUCGGCaa--CaCuCCGCUCCG----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 121660 0.66 0.707977
Target:  5'- gCGGCCuGcgGcgGAGGCGGagcGGCGGgCGGc -3'
miRNA:   3'- -GUCGG-CaaCa-CUCCGCU---CCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 737 0.66 0.707977
Target:  5'- -cGCCGgcG-GGGGUgGGGGCGGCgCGa -3'
miRNA:   3'- guCGGCaaCaCUCCG-CUCCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 156459 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.