miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 5970 0.66 0.688653
Target:  5'- aGGCCGcgGgGGGGCGAGucGCGgggugguaggcGCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCUC--CGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 6099 0.71 0.432782
Target:  5'- gGGUCGgcGggaacgGGGGCGAcGGCGGCgGGc -3'
miRNA:   3'- gUCGGCaaCa-----CUCCGCU-CCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 6526 0.66 0.717554
Target:  5'- gAGCaGggG-GGGGCGGGG-GGCCGa -3'
miRNA:   3'- gUCGgCaaCaCUCCGCUCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 6793 0.67 0.659362
Target:  5'- gAGCCGUgccucGG-GGGGCGcGCCGGg -3'
miRNA:   3'- gUCGGCAacacuCCgCUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 6826 0.68 0.620058
Target:  5'- gGGCUGg-GUGGGGgGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCACUCCgCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 7510 0.66 0.705092
Target:  5'- gGGCCGgagcgaaaggaggGAGGgGGGGCGGCgaugcgCGGg -3'
miRNA:   3'- gUCGGCaaca---------CUCCgCUCCGCCG------GCC- -5'
21702 5' -60.9 NC_004812.1 + 7639 0.73 0.32295
Target:  5'- gCGGCCGggGUcGGGGCGcgaagcugcGGGCccgcgGGCCGGg -3'
miRNA:   3'- -GUCGGCaaCA-CUCCGC---------UCCG-----CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 7943 0.68 0.599448
Target:  5'- gCGGCCGg---GGGGCGcguccggGGGgGGCCGa -3'
miRNA:   3'- -GUCGGCaacaCUCCGC-------UCCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 8190 0.77 0.204284
Target:  5'- gGGCCGggGUccGGcCGAGaGCGGCCGGg -3'
miRNA:   3'- gUCGGCaaCAcuCC-GCUC-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 8246 0.7 0.504504
Target:  5'- gGGCCGggGguccgcccccgGGGGCGccGGgGGCCGGc -3'
miRNA:   3'- gUCGGCaaCa----------CUCCGCu-CCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 9001 0.66 0.698341
Target:  5'- -uGCUGUUGUG-GGCGcuuGG-GGCCGu -3'
miRNA:   3'- guCGGCAACACuCCGCu--CCgCCGGCc -5'
21702 5' -60.9 NC_004812.1 + 9911 0.66 0.727064
Target:  5'- uGGUCGgc--GAGGCGuGGCGcCCGGu -3'
miRNA:   3'- gUCGGCaacaCUCCGCuCCGCcGGCC- -5'
21702 5' -60.9 NC_004812.1 + 10396 0.67 0.659362
Target:  5'- gGGCCGgc--GGGGUGAGGgGGaucaCGGa -3'
miRNA:   3'- gUCGGCaacaCUCCGCUCCgCCg---GCC- -5'
21702 5' -60.9 NC_004812.1 + 11341 0.67 0.659362
Target:  5'- gGGCCGacggUGUG-GGCucgacgggaggGGGGCGGuaCCGGg -3'
miRNA:   3'- gUCGGCa---ACACuCCG-----------CUCCGCC--GGCC- -5'
21702 5' -60.9 NC_004812.1 + 11910 0.73 0.3521
Target:  5'- uCGGCgaUGggGUgGGGGUGGGGCGGCgGGg -3'
miRNA:   3'- -GUCG--GCaaCA-CUCCGCUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 12306 0.7 0.504504
Target:  5'- -cGCUGU--UGAGGCgGAGGuuGCCGGg -3'
miRNA:   3'- guCGGCAacACUCCG-CUCCgcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 12806 0.67 0.663283
Target:  5'- aCGGCCGUcgggccgauggggaGUG-GGCGGGGaagGGCCGa -3'
miRNA:   3'- -GUCGGCAa-------------CACuCCGCUCCg--CCGGCc -5'
21702 5' -60.9 NC_004812.1 + 13103 0.67 0.678923
Target:  5'- gCGGCCGacGgcgGAGGCGuguagauGCGGCuCGGg -3'
miRNA:   3'- -GUCGGCaaCa--CUCCGCuc-----CGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 13323 0.66 0.745848
Target:  5'- -cGCCGggGgucgGGGGUGcGGCGgucccuuccgcGCCGGg -3'
miRNA:   3'- guCGGCaaCa---CUCCGCuCCGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 13389 0.7 0.476954
Target:  5'- -cGCCGggGgucgGGGGCGcGGCgggggugacGGCCGGa -3'
miRNA:   3'- guCGGCaaCa---CUCCGCuCCG---------CCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.