miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 6445 0.66 0.999998
Target:  5'- cGggGGGAccGCCgGGACGACc----- -3'
miRNA:   3'- cCuuUCCUu-UGGgUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 64078 0.66 0.999998
Target:  5'- aGGAgGAGGAcgAugCCGGG-GGCGAAGAGg -3'
miRNA:   3'- -CCU-UUCCU--UugGGUCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 130572 0.66 0.999998
Target:  5'- cGGGGcguccGGggGCCCcuGGACGugGAGc-- -3'
miRNA:   3'- -CCUUu----CCuuUGGG--UCUGCugUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 108966 0.66 0.999998
Target:  5'- gGGAucGcGGGACCCGGugGGgAGGc-- -3'
miRNA:   3'- -CCUuuC-CUUUGGGUCugCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 11363 0.66 0.999998
Target:  5'- gGGAGGGGGGcgguACCgGGGCGGgGAu--- -3'
miRNA:   3'- -CCUUUCCUU----UGGgUCUGCUgUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 141193 0.66 0.999998
Target:  5'- ----cGGAGGCCCGgGGCGGCGc---- -3'
miRNA:   3'- ccuuuCCUUUGGGU-CUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 91751 0.66 0.999998
Target:  5'- gGGGGAGGAAgagcGCCCgcgAGAUGugGGc--- -3'
miRNA:   3'- -CCUUUCCUU----UGGG---UCUGCugUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 30509 0.67 0.999997
Target:  5'- gGGAGGGGAcGCCCGGGgcCGGgGGc--- -3'
miRNA:   3'- -CCUUUCCUuUGGGUCU--GCUgUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 155389 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 153319 0.67 0.999997
Target:  5'- cGGGu-GGAcgcgcggugGGCCCGGGCGGCGu---- -3'
miRNA:   3'- -CCUuuCCU---------UUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 124343 0.67 0.999997
Target:  5'- gGGggGGGAcgccgcgGACCgGGAgGACGu---- -3'
miRNA:   3'- -CCuuUCCU-------UUGGgUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 114006 0.67 0.999997
Target:  5'- cGGGAGGGAGuCCCGGGCcAUGGu--- -3'
miRNA:   3'- -CCUUUCCUUuGGGUCUGcUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 48271 0.67 0.999997
Target:  5'- cGGggGcgcuGGAGGCCCuggAGACGGCc----- -3'
miRNA:   3'- -CCuuU----CCUUUGGG---UCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 122418 0.67 0.999997
Target:  5'- cGGGu-GGAcgcgcggugGGCCCGGGCGGCGu---- -3'
miRNA:   3'- -CCUuuCCU---------UUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 156017 0.67 0.999997
Target:  5'- gGGAGGGGAcGCCCGGGgcCGGgGGc--- -3'
miRNA:   3'- -CCUUUCCUuUGGGUCU--GCUgUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 124488 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 113777 0.67 0.999997
Target:  5'- ----cGGcgccAAGCgCCAGACGACGGAGAu -3'
miRNA:   3'- ccuuuCC----UUUG-GGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 21086 0.67 0.999996
Target:  5'- ----cGGcgGCCgAGGCGGCGAAGAc -3'
miRNA:   3'- ccuuuCCuuUGGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 76463 0.67 0.999996
Target:  5'- aGGGcgacGAGGAAGgCCAGGgGGCAc---- -3'
miRNA:   3'- -CCU----UUCCUUUgGGUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 143666 0.67 0.999996
Target:  5'- cGGAAGaaucGGAGGCCCcGGCGAUc----- -3'
miRNA:   3'- -CCUUU----CCUUUGGGuCUGCUGuuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.