miRNA display CGI


Results 41 - 60 of 981 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 3' -61.6 NC_004812.1 + 14706 0.66 0.735434
Target:  5'- -aGaCGgCCACGAUGCgcugguucuCCGGGAUGAAc -3'
miRNA:   3'- ggC-GCgGGUGCUGCG---------GGCCCUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 43605 0.66 0.735434
Target:  5'- gCCGauaGCCC---ACGCCgCGGGGCaGggGg -3'
miRNA:   3'- -GGCg--CGGGugcUGCGG-GCCCUG-CuuC- -5'
21717 3' -61.6 NC_004812.1 + 10985 0.66 0.735434
Target:  5'- gCCGUGCUgGCG-CGCCCcGG-CGGAc -3'
miRNA:   3'- -GGCGCGGgUGCuGCGGGcCCuGCUUc -5'
21717 3' -61.6 NC_004812.1 + 142936 0.66 0.735434
Target:  5'- -gGUGCCCgagagcuucaucACGAacccggccaaccUGCCCGGGugGAc- -3'
miRNA:   3'- ggCGCGGG------------UGCU------------GCGGGCCCugCUuc -5'
21717 3' -61.6 NC_004812.1 + 144634 0.66 0.73451
Target:  5'- aCGCGCgCCAUcGCGuCCCGGGgaugucuGCGGcAGg -3'
miRNA:   3'- gGCGCG-GGUGcUGC-GGGCCC-------UGCU-UC- -5'
21717 3' -61.6 NC_004812.1 + 45744 0.66 0.73451
Target:  5'- gCGgGCuCCGCGGaGCCCGaGGggagacgGCGAGGg -3'
miRNA:   3'- gGCgCG-GGUGCUgCGGGC-CC-------UGCUUC- -5'
21717 3' -61.6 NC_004812.1 + 15108 0.66 0.73266
Target:  5'- -aGCGCCUggugcgccgguacgGCGGCGCCCccGACGgcGa -3'
miRNA:   3'- ggCGCGGG--------------UGCUGCGGGccCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 15749 0.66 0.726162
Target:  5'- cCCGCGCCuUGCG-CGCCUGcGGcACGucGu -3'
miRNA:   3'- -GGCGCGG-GUGCuGCGGGC-CC-UGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 107381 0.66 0.726162
Target:  5'- cCCGCGCgaUCGCcucgGACGgcaccgccCCCGGGAUGAGc -3'
miRNA:   3'- -GGCGCG--GGUG----CUGC--------GGGCCCUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 117537 0.66 0.726162
Target:  5'- gCCGCgGCUCACGcACGCCgacaccCGcGGGCGGc- -3'
miRNA:   3'- -GGCG-CGGGUGC-UGCGG------GC-CCUGCUuc -5'
21717 3' -61.6 NC_004812.1 + 50029 0.66 0.726162
Target:  5'- aUCGCGCCguCuGCGCCCGGccCGGGc -3'
miRNA:   3'- -GGCGCGGguGcUGCGGGCCcuGCUUc -5'
21717 3' -61.6 NC_004812.1 + 26724 0.66 0.726162
Target:  5'- gCGCGUCgCACGGCgGgCCGuGGGCGuuGg -3'
miRNA:   3'- gGCGCGG-GUGCUG-CgGGC-CCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 94175 0.66 0.726162
Target:  5'- uCCGUgguguuGCCCGcCGACGCgCGaGACGAGu -3'
miRNA:   3'- -GGCG------CGGGU-GCUGCGgGCcCUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 77311 0.66 0.726162
Target:  5'- -gGCGgCgACGACGCCgaagacgaCGaGGACGggGc -3'
miRNA:   3'- ggCGCgGgUGCUGCGG--------GC-CCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 141204 0.66 0.726162
Target:  5'- cCCGCGUUC-CGGCgGgCgGGGGCGAGu -3'
miRNA:   3'- -GGCGCGGGuGCUG-CgGgCCCUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 41183 0.66 0.726162
Target:  5'- gCCGC-CCCaACGuCGCUCGGGcguGAAGu -3'
miRNA:   3'- -GGCGcGGG-UGCuGCGGGCCCug-CUUC- -5'
21717 3' -61.6 NC_004812.1 + 128586 0.66 0.726162
Target:  5'- gCCGCGCgcgucgguCCA-GGCGggCGGGGCGggGg -3'
miRNA:   3'- -GGCGCG--------GGUgCUGCggGCCCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 70848 0.66 0.726162
Target:  5'- aCGaCGCCCACaggaGACGCggGGGGCGuGGc -3'
miRNA:   3'- gGC-GCGGGUG----CUGCGggCCCUGCuUC- -5'
21717 3' -61.6 NC_004812.1 + 42734 0.66 0.726162
Target:  5'- gCCGCGgCCACaGAgguCGCCCGcauGACGGGc -3'
miRNA:   3'- -GGCGCgGGUG-CU---GCGGGCc--CUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 128051 0.66 0.726162
Target:  5'- gCCG-GCCgaacauCGCGGCGCCCGaGGuCGGGc -3'
miRNA:   3'- -GGCgCGG------GUGCUGCGGGC-CCuGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.