Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21717 | 5' | -55.4 | NC_004812.1 | + | 53614 | 0.69 | 0.773243 |
Target: 5'- ---gGUCgAGcAUCgAGGGGCUGCUGGa -3' miRNA: 3'- gagaCAG-UC-UAGgUCCUCGACGACCg -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 55139 | 0.75 | 0.452935 |
Target: 5'- -cCUGcgcCAGggCCAGGAGCUGgcCUGGCa -3' miRNA: 3'- gaGACa--GUCuaGGUCCUCGAC--GACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 60033 | 0.67 | 0.875033 |
Target: 5'- cCUCgGUCAGGUgCAGG-GCcgaGUUGGUg -3' miRNA: 3'- -GAGaCAGUCUAgGUCCuCGa--CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 60859 | 0.7 | 0.754067 |
Target: 5'- ---cGUCAGGUUCGGGGcGCgcgGCUGGg -3' miRNA: 3'- gagaCAGUCUAGGUCCU-CGa--CGACCg -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 61276 | 0.73 | 0.57061 |
Target: 5'- cCUC-GUCGGAUCCuggauGGGGCgUGCgGGCc -3' miRNA: 3'- -GAGaCAGUCUAGGu----CCUCG-ACGaCCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 74181 | 0.7 | 0.714473 |
Target: 5'- -gCUGgucgcgaagggCAGGUCCAGGucGCUGgUGGCc -3' miRNA: 3'- gaGACa----------GUCUAGGUCCu-CGACgACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 78269 | 0.67 | 0.875033 |
Target: 5'- gCUCaccGUUAGGUCCAGGAgGCccgagGCcgGGCc -3' miRNA: 3'- -GAGa--CAGUCUAGGUCCU-CGa----CGa-CCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 78535 | 0.7 | 0.734451 |
Target: 5'- gCUCgGUCAGGcugCCgcaaGGGGGCUccggggGCUGGCg -3' miRNA: 3'- -GAGaCAGUCUa--GG----UCCUCGA------CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 78996 | 0.66 | 0.920527 |
Target: 5'- -----aCAGcgCCaAGGcGCUGCUGGCc -3' miRNA: 3'- gagacaGUCuaGG-UCCuCGACGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 79003 | 0.66 | 0.920527 |
Target: 5'- ---gGUCGGGggugcgCCGGGGGUUgggggucgGCUGGCu -3' miRNA: 3'- gagaCAGUCUa-----GGUCCUCGA--------CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 79813 | 0.7 | 0.724503 |
Target: 5'- -cCUGcgCGccGAccUCUGGGGGCUGCUGGCc -3' miRNA: 3'- gaGACa-GU--CU--AGGUCCUCGACGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 84215 | 0.67 | 0.867612 |
Target: 5'- gCUCacgUGGAUCCGcggccuGGAGgaGCUGGCg -3' miRNA: 3'- -GAGacaGUCUAGGU------CCUCgaCGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 92126 | 0.67 | 0.887829 |
Target: 5'- gCUCUGggGGAUgCGGGAGCggaucugcuuccGCaUGGCg -3' miRNA: 3'- -GAGACagUCUAgGUCCUCGa-----------CG-ACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 95964 | 0.66 | 0.926066 |
Target: 5'- gCUCacgGUCGcGcgCCAGGGGCUGUaccucUGGa -3' miRNA: 3'- -GAGa--CAGU-CuaGGUCCUCGACG-----ACCg -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 96867 | 0.67 | 0.882232 |
Target: 5'- aUC-GUCGGccgCCAGGAGCuggacgUGCUGcGCu -3' miRNA: 3'- gAGaCAGUCua-GGUCCUCG------ACGAC-CG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 98683 | 0.66 | 0.895945 |
Target: 5'- -gCUG-CAGAUUgAGGA-CUGgCUGGCg -3' miRNA: 3'- gaGACaGUCUAGgUCCUcGAC-GACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 101196 | 0.67 | 0.882232 |
Target: 5'- gUCUG-CGGggCCAGGGGCcccGC-GGCc -3' miRNA: 3'- gAGACaGUCuaGGUCCUCGa--CGaCCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 104780 | 0.68 | 0.809976 |
Target: 5'- ---cGggGGGUCCAGGGGCcguaggGCUGGUg -3' miRNA: 3'- gagaCagUCUAGGUCCUCGa-----CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 121192 | 0.7 | 0.70437 |
Target: 5'- uUCUGcCGacGAUCCGGcGGCaGCUGGCg -3' miRNA: 3'- gAGACaGU--CUAGGUCcUCGaCGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 123510 | 0.67 | 0.867612 |
Target: 5'- gUCUgggGUCGGGcgCCGGGAGC-GC-GGCg -3' miRNA: 3'- gAGA---CAGUCUa-GGUCCUCGaCGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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