miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 5' -55.4 NC_004812.1 + 4515 0.68 0.844075
Target:  5'- -gCUGUUcGA-CCAGGGcgcGCUGCUGGg -3'
miRNA:   3'- gaGACAGuCUaGGUCCU---CGACGACCg -5'
21717 5' -55.4 NC_004812.1 + 4830 0.69 0.763715
Target:  5'- cCUC-GUCGGcGUCCAGGGGCacgGCccgcGGCg -3'
miRNA:   3'- -GAGaCAGUC-UAGGUCCUCGa--CGa---CCG- -5'
21717 5' -55.4 NC_004812.1 + 7905 0.67 0.889205
Target:  5'- gUCgcccgCAGGUgUCGGGGGCUGC-GGCg -3'
miRNA:   3'- gAGaca--GUCUA-GGUCCUCGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 8391 0.66 0.920527
Target:  5'- ------gGGGUCCGGGGGCgcgGCgggGGCu -3'
miRNA:   3'- gagacagUCUAGGUCCUCGa--CGa--CCG- -5'
21717 5' -55.4 NC_004812.1 + 13720 0.66 0.895945
Target:  5'- ---gGUCGGGUCCAGGgucaggucGGCguagGCggGGCu -3'
miRNA:   3'- gagaCAGUCUAGGUCC--------UCGa---CGa-CCG- -5'
21717 5' -55.4 NC_004812.1 + 14293 0.72 0.622077
Target:  5'- -gCUG-CAGGUCCuccacggaggcGGGGUUGCUGGCc -3'
miRNA:   3'- gaGACaGUCUAGGu----------CCUCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 15179 0.67 0.889205
Target:  5'- cCUCcGUCGGcgCCcagaggAGGAcGCUGC-GGCa -3'
miRNA:   3'- -GAGaCAGUCuaGG------UCCU-CGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 17139 0.67 0.882232
Target:  5'- cCUCUgccgcgGUCGGG-CCGGGGGgaGUcgUGGCg -3'
miRNA:   3'- -GAGA------CAGUCUaGGUCCUCgaCG--ACCG- -5'
21717 5' -55.4 NC_004812.1 + 23120 0.67 0.866102
Target:  5'- gUCUGguugcugCAGAUCaccguccuGCUGCUGGCg -3'
miRNA:   3'- gAGACa------GUCUAGguccu---CGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 23482 0.67 0.889205
Target:  5'- -gCUGgcgguGGUCgAGGGGCUGCUGucGCa -3'
miRNA:   3'- gaGACagu--CUAGgUCCUCGACGAC--CG- -5'
21717 5' -55.4 NC_004812.1 + 35416 0.68 0.844075
Target:  5'- -gCUGUUcGA-CCAGGGcgcGCUGCUGGg -3'
miRNA:   3'- gaGACAGuCUaGGUCCU---CGACGACCg -5'
21717 5' -55.4 NC_004812.1 + 37028 0.69 0.763715
Target:  5'- gCUCgaccGUCuGGUCCAGGuGCUgGgaGGCc -3'
miRNA:   3'- -GAGa---CAGuCUAGGUCCuCGA-CgaCCG- -5'
21717 5' -55.4 NC_004812.1 + 38806 0.67 0.889205
Target:  5'- gUCgcccgCAGGUgUCGGGGGCUGC-GGCg -3'
miRNA:   3'- gAGaca--GUCUA-GGUCCUCGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 39292 0.66 0.920527
Target:  5'- ------gGGGUCCGGGGGCgcgGCgggGGCu -3'
miRNA:   3'- gagacagUCUAGGUCCUCGa--CGa--CCG- -5'
21717 5' -55.4 NC_004812.1 + 42805 0.66 0.914744
Target:  5'- -cCUGUCugccuucGA-CCGGGGGCUGgUGGg -3'
miRNA:   3'- gaGACAGu------CUaGGUCCUCGACgACCg -5'
21717 5' -55.4 NC_004812.1 + 46423 0.69 0.763715
Target:  5'- ---gGcCAGGUCCAGGcGCUccccugggcGCUGGCg -3'
miRNA:   3'- gagaCaGUCUAGGUCCuCGA---------CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 48257 0.67 0.882232
Target:  5'- -cCUGgacCGGGUCaCGGGGGC-GCUGGa -3'
miRNA:   3'- gaGACa--GUCUAG-GUCCUCGaCGACCg -5'
21717 5' -55.4 NC_004812.1 + 49575 0.75 0.462269
Target:  5'- -aCgagCAGggCCuGGGGCUGCUGGCg -3'
miRNA:   3'- gaGacaGUCuaGGuCCUCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 50253 0.66 0.920527
Target:  5'- ---gGUgAGGUCCAcccGGAGCUcGCcgGGCg -3'
miRNA:   3'- gagaCAgUCUAGGU---CCUCGA-CGa-CCG- -5'
21717 5' -55.4 NC_004812.1 + 50844 0.68 0.827388
Target:  5'- -aCUGggCGG--UCAGGcGGCUGCUGGCu -3'
miRNA:   3'- gaGACa-GUCuaGGUCC-UCGACGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.