miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 5' -55.4 NC_004812.1 + 42805 0.66 0.914744
Target:  5'- -cCUGUCugccuucGA-CCGGGGGCUGgUGGg -3'
miRNA:   3'- gaGACAGu------CUaGGUCCUCGACgACCg -5'
21717 5' -55.4 NC_004812.1 + 4515 0.68 0.844075
Target:  5'- -gCUGUUcGA-CCAGGGcgcGCUGCUGGg -3'
miRNA:   3'- gaGACAGuCUaGGUCCU---CGACGACCg -5'
21717 5' -55.4 NC_004812.1 + 23120 0.67 0.866102
Target:  5'- gUCUGguugcugCAGAUCaccguccuGCUGCUGGCg -3'
miRNA:   3'- gAGACa------GUCUAGguccu---CGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 78269 0.67 0.875033
Target:  5'- gCUCaccGUUAGGUCCAGGAgGCccgagGCcgGGCc -3'
miRNA:   3'- -GAGa--CAGUCUAGGUCCU-CGa----CGa-CCG- -5'
21717 5' -55.4 NC_004812.1 + 60033 0.67 0.875033
Target:  5'- cCUCgGUCAGGUgCAGG-GCcgaGUUGGUg -3'
miRNA:   3'- -GAGaCAGUCUAgGUCCuCGa--CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 101196 0.67 0.882232
Target:  5'- gUCUG-CGGggCCAGGGGCcccGC-GGCc -3'
miRNA:   3'- gAGACaGUCuaGGUCCUCGa--CGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 48257 0.67 0.882232
Target:  5'- -cCUGgacCGGGUCaCGGGGGC-GCUGGa -3'
miRNA:   3'- gaGACa--GUCUAG-GUCCUCGaCGACCg -5'
21717 5' -55.4 NC_004812.1 + 7905 0.67 0.889205
Target:  5'- gUCgcccgCAGGUgUCGGGGGCUGC-GGCg -3'
miRNA:   3'- gAGaca--GUCUA-GGUCCUCGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 23482 0.67 0.889205
Target:  5'- -gCUGgcgguGGUCgAGGGGCUGCUGucGCa -3'
miRNA:   3'- gaGACagu--CUAGgUCCUCGACGAC--CG- -5'
21717 5' -55.4 NC_004812.1 + 129733 0.68 0.818769
Target:  5'- ---cGUCGGG-CCGGGGGCgGCggcGGCg -3'
miRNA:   3'- gagaCAGUCUaGGUCCUCGaCGa--CCG- -5'
21717 5' -55.4 NC_004812.1 + 104780 0.68 0.809976
Target:  5'- ---cGggGGGUCCAGGGGCcguaggGCUGGUg -3'
miRNA:   3'- gagaCagUCUAGGUCCUCGa-----CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 130338 0.69 0.763715
Target:  5'- cCUC-GUCGGcGUCCAGGGGCacgGCccgcGGCg -3'
miRNA:   3'- -GAGaCAGUC-UAGGUCCUCGa--CGa---CCG- -5'
21717 5' -55.4 NC_004812.1 + 49575 0.75 0.462269
Target:  5'- -aCgagCAGggCCuGGGGCUGCUGGCg -3'
miRNA:   3'- gaGacaGUCuaGGuCCUCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 61276 0.73 0.57061
Target:  5'- cCUC-GUCGGAUCCuggauGGGGCgUGCgGGCc -3'
miRNA:   3'- -GAGaCAGUCUAGGu----CCUCG-ACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 14293 0.72 0.622077
Target:  5'- -gCUG-CAGGUCCuccacggaggcGGGGUUGCUGGCc -3'
miRNA:   3'- gaGACaGUCUAGGu----------CCUCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 74181 0.7 0.714473
Target:  5'- -gCUGgucgcgaagggCAGGUCCAGGucGCUGgUGGCc -3'
miRNA:   3'- gaGACa----------GUCUAGGUCCu-CGACgACCG- -5'
21717 5' -55.4 NC_004812.1 + 78535 0.7 0.734451
Target:  5'- gCUCgGUCAGGcugCCgcaaGGGGGCUccggggGCUGGCg -3'
miRNA:   3'- -GAGaCAGUCUa--GG----UCCUCGA------CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 60859 0.7 0.754067
Target:  5'- ---cGUCAGGUUCGGGGcGCgcgGCUGGg -3'
miRNA:   3'- gagaCAGUCUAGGUCCU-CGa--CGACCg -5'
21717 5' -55.4 NC_004812.1 + 46423 0.69 0.763715
Target:  5'- ---gGcCAGGUCCAGGcGCUccccugggcGCUGGCg -3'
miRNA:   3'- gagaCaGUCUAGGUCCuCGA---------CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 37028 0.69 0.763715
Target:  5'- gCUCgaccGUCuGGUCCAGGuGCUgGgaGGCc -3'
miRNA:   3'- -GAGa---CAGuCUAGGUCCuCGA-CgaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.