Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21717 | 5' | -55.4 | NC_004812.1 | + | 136774 | 1.11 | 0.002232 |
Target: 5'- cCUCUGUCAGAUCCAGGAGCUGCUGGCc -3' miRNA: 3'- -GAGACAGUCUAGGUCCUCGACGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 55139 | 0.75 | 0.452935 |
Target: 5'- -cCUGcgcCAGggCCAGGAGCUGgcCUGGCa -3' miRNA: 3'- gaGACa--GUCuaGGUCCUCGAC--GACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 49575 | 0.75 | 0.462269 |
Target: 5'- -aCgagCAGggCCuGGGGCUGCUGGCg -3' miRNA: 3'- gaGacaGUCuaGGuCCUCGACGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 139948 | 0.73 | 0.540204 |
Target: 5'- uUCUGgggCGGGgggCCGGGAGCgcgcgGCgUGGCg -3' miRNA: 3'- gAGACa--GUCUa--GGUCCUCGa----CG-ACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 61276 | 0.73 | 0.57061 |
Target: 5'- cCUC-GUCGGAUCCuggauGGGGCgUGCgGGCc -3' miRNA: 3'- -GAGaCAGUCUAGGu----CCUCG-ACGaCCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 14293 | 0.72 | 0.622077 |
Target: 5'- -gCUG-CAGGUCCuccacggaggcGGGGUUGCUGGCc -3' miRNA: 3'- gaGACaGUCUAGGu----------CCUCGACGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 121192 | 0.7 | 0.70437 |
Target: 5'- uUCUGcCGacGAUCCGGcGGCaGCUGGCg -3' miRNA: 3'- gAGACaGU--CUAGGUCcUCGaCGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 74181 | 0.7 | 0.714473 |
Target: 5'- -gCUGgucgcgaagggCAGGUCCAGGucGCUGgUGGCc -3' miRNA: 3'- gaGACa----------GUCUAGGUCCu-CGACgACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 79813 | 0.7 | 0.724503 |
Target: 5'- -cCUGcgCGccGAccUCUGGGGGCUGCUGGCc -3' miRNA: 3'- gaGACa-GU--CU--AGGUCCUCGACGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 78535 | 0.7 | 0.734451 |
Target: 5'- gCUCgGUCAGGcugCCgcaaGGGGGCUccggggGCUGGCg -3' miRNA: 3'- -GAGaCAGUCUa--GG----UCCUCGA------CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 123743 | 0.7 | 0.744309 |
Target: 5'- -cCUGUCuGGcgccUCCGGGGuGCcGCUGGCc -3' miRNA: 3'- gaGACAGuCU----AGGUCCU-CGaCGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 60859 | 0.7 | 0.754067 |
Target: 5'- ---cGUCAGGUUCGGGGcGCgcgGCUGGg -3' miRNA: 3'- gagaCAGUCUAGGUCCU-CGa--CGACCg -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 37028 | 0.69 | 0.763715 |
Target: 5'- gCUCgaccGUCuGGUCCAGGuGCUgGgaGGCc -3' miRNA: 3'- -GAGa---CAGuCUAGGUCCuCGA-CgaCCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 46423 | 0.69 | 0.763715 |
Target: 5'- ---gGcCAGGUCCAGGcGCUccccugggcGCUGGCg -3' miRNA: 3'- gagaCaGUCUAGGUCCuCGA---------CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 4830 | 0.69 | 0.763715 |
Target: 5'- cCUC-GUCGGcGUCCAGGGGCacgGCccgcGGCg -3' miRNA: 3'- -GAGaCAGUC-UAGGUCCUCGa--CGa---CCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 130338 | 0.69 | 0.763715 |
Target: 5'- cCUC-GUCGGcGUCCAGGGGCacgGCccgcGGCg -3' miRNA: 3'- -GAGaCAGUC-UAGGUCCUCGa--CGa---CCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 53614 | 0.69 | 0.773243 |
Target: 5'- ---gGUCgAGcAUCgAGGGGCUGCUGGa -3' miRNA: 3'- gagaCAG-UC-UAGgUCCUCGACGACCg -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 104780 | 0.68 | 0.809976 |
Target: 5'- ---cGggGGGUCCAGGGGCcguaggGCUGGUg -3' miRNA: 3'- gagaCagUCUAGGUCCUCGa-----CGACCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 129733 | 0.68 | 0.818769 |
Target: 5'- ---cGUCGGG-CCGGGGGCgGCggcGGCg -3' miRNA: 3'- gagaCAGUCUaGGUCCUCGaCGa--CCG- -5' |
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21717 | 5' | -55.4 | NC_004812.1 | + | 50844 | 0.68 | 0.827388 |
Target: 5'- -aCUGggCGG--UCAGGcGGCUGCUGGCu -3' miRNA: 3'- gaGACa-GUCuaGGUCC-UCGACGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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