Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21721 | 3' | -55.2 | NC_004812.1 | + | 138267 | 1.11 | 0.003133 |
Target: 5'- cGGUGGCCGAUGUCGACAGACAUCCCGu -3' miRNA: 3'- -CCACCGGCUACAGCUGUCUGUAGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 39036 | 0.76 | 0.490376 |
Target: 5'- cGGUGGUgaCGAgcacgccGUCGACGGGCcgCCCGc -3' miRNA: 3'- -CCACCG--GCUa------CAGCUGUCUGuaGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 54518 | 0.75 | 0.499878 |
Target: 5'- cGUGGCCGGccUCGACGGACGcguuggugCCCGg -3' miRNA: 3'- cCACCGGCUacAGCUGUCUGUa-------GGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 27736 | 0.75 | 0.499878 |
Target: 5'- cGGggGGCCGcgGUCaGCGGGCcgCCCGc -3' miRNA: 3'- -CCa-CCGGCuaCAGcUGUCUGuaGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 47261 | 0.73 | 0.649108 |
Target: 5'- cGGUGGCCGA-GUCuACGG-CGcCCCGg -3' miRNA: 3'- -CCACCGGCUaCAGcUGUCuGUaGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 23622 | 0.73 | 0.659219 |
Target: 5'- aGUGGCCGGgcgcccaGACGGGCGUCCgCGu -3' miRNA: 3'- cCACCGGCUacag---CUGUCUGUAGG-GC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 36806 | 0.72 | 0.67937 |
Target: 5'- aGG-GGCCGccGggCGGCAGGCAgacCCCGg -3' miRNA: 3'- -CCaCCGGCuaCa-GCUGUCUGUa--GGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 5905 | 0.72 | 0.67937 |
Target: 5'- aGG-GGCCGccGggCGGCAGGCAgacCCCGg -3' miRNA: 3'- -CCaCCGGCuaCa-GCUGUCUGUa--GGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 99137 | 0.72 | 0.67937 |
Target: 5'- aGGUGGCCGAagacGUcucCGACGG-CcgCCCGg -3' miRNA: 3'- -CCACCGGCUa---CA---GCUGUCuGuaGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 15958 | 0.72 | 0.699369 |
Target: 5'- --cGGCCGGg--CGACGGACGcCCCGc -3' miRNA: 3'- ccaCCGGCUacaGCUGUCUGUaGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 128675 | 0.71 | 0.748242 |
Target: 5'- cGGUGGCCGGcgGUCuuccGGgAGGCGgggcgCCCGg -3' miRNA: 3'- -CCACCGGCUa-CAG----CUgUCUGUa----GGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 44545 | 0.71 | 0.757752 |
Target: 5'- cGUGGcCCGGgcUCGACGGACGggCCCu -3' miRNA: 3'- cCACC-GGCUacAGCUGUCUGUa-GGGc -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 116497 | 0.71 | 0.767155 |
Target: 5'- aGG-GGCCGGggGUCgcgGACGGACGcgcgCCCGg -3' miRNA: 3'- -CCaCCGGCUa-CAG---CUGUCUGUa---GGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 43939 | 0.71 | 0.767155 |
Target: 5'- cGGUGGUCGcuccgGUCca-GGGCGUCCCGc -3' miRNA: 3'- -CCACCGGCua---CAGcugUCUGUAGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 79710 | 0.7 | 0.773666 |
Target: 5'- gGGUGGCCcccGccGUCcuggccacccuccgGGCGGACAUCCCc -3' miRNA: 3'- -CCACCGG---CuaCAG--------------CUGUCUGUAGGGc -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 50573 | 0.7 | 0.785597 |
Target: 5'- cGUGGCCGAgcgccggCGGCAGGCcgggAUCgCCGg -3' miRNA: 3'- cCACCGGCUaca----GCUGUCUG----UAG-GGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 105584 | 0.7 | 0.794619 |
Target: 5'- aGGUGGCUcAUGggaGAUAGACAcgcCCCGa -3' miRNA: 3'- -CCACCGGcUACag-CUGUCUGUa--GGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 77588 | 0.7 | 0.812225 |
Target: 5'- cGUGGuaCCGGcgGUCG-CGGGCGUCCCc -3' miRNA: 3'- cCACC--GGCUa-CAGCuGUCUGUAGGGc -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 35288 | 0.69 | 0.820792 |
Target: 5'- -cUGGCCGAggcGUCGcCcgGGugGUCCCGc -3' miRNA: 3'- ccACCGGCUa--CAGCuG--UCugUAGGGC- -5' |
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21721 | 3' | -55.2 | NC_004812.1 | + | 4387 | 0.69 | 0.820792 |
Target: 5'- -cUGGCCGAggcGUCGcCcgGGugGUCCCGc -3' miRNA: 3'- ccACCGGCUa--CAGCuG--UCugUAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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