miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 3' -55.2 NC_004812.1 + 119486 0.68 0.882687
Target:  5'- cGG-GGCCGcgG-CGGCAGgggcgGCGUCCgCGg -3'
miRNA:   3'- -CCaCCGGCuaCaGCUGUC-----UGUAGG-GC- -5'
21721 3' -55.2 NC_004812.1 + 105584 0.7 0.794619
Target:  5'- aGGUGGCUcAUGggaGAUAGACAcgcCCCGa -3'
miRNA:   3'- -CCACCGGcUACag-CUGUCUGUa--GGGC- -5'
21721 3' -55.2 NC_004812.1 + 77588 0.7 0.812225
Target:  5'- cGUGGuaCCGGcgGUCG-CGGGCGUCCCc -3'
miRNA:   3'- cCACC--GGCUa-CAGCuGUCUGUAGGGc -5'
21721 3' -55.2 NC_004812.1 + 4387 0.69 0.820792
Target:  5'- -cUGGCCGAggcGUCGcCcgGGugGUCCCGc -3'
miRNA:   3'- ccACCGGCUa--CAGCuG--UCugUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 16723 0.69 0.829191
Target:  5'- cGG-GGCCGGUcccgcucgcccGUCGACgcaGGGCGcCCCGg -3'
miRNA:   3'- -CCaCCGGCUA-----------CAGCUG---UCUGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 27178 0.69 0.845455
Target:  5'- --aGGCUGAaGUCGGCcaGGACggCCCGc -3'
miRNA:   3'- ccaCCGGCUaCAGCUG--UCUGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 115277 0.68 0.875656
Target:  5'- --aGGCCGucgugggcGUCGACGGAgAUCaCCGu -3'
miRNA:   3'- ccaCCGGCua------CAGCUGUCUgUAG-GGC- -5'
21721 3' -55.2 NC_004812.1 + 103841 0.68 0.875656
Target:  5'- cGGUacaGGUCGggGUUGGCGGGaagCCCGg -3'
miRNA:   3'- -CCA---CCGGCuaCAGCUGUCUguaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 76070 0.68 0.882687
Target:  5'- --cGGCCGg---CG-CGGGCGUCCCGg -3'
miRNA:   3'- ccaCCGGCuacaGCuGUCUGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 50573 0.7 0.785597
Target:  5'- cGUGGCCGAgcgccggCGGCAGGCcgggAUCgCCGg -3'
miRNA:   3'- cCACCGGCUaca----GCUGUCUG----UAG-GGC- -5'
21721 3' -55.2 NC_004812.1 + 116497 0.71 0.767155
Target:  5'- aGG-GGCCGGggGUCgcgGACGGACGcgcgCCCGg -3'
miRNA:   3'- -CCaCCGGCUa-CAG---CUGUCUGUa---GGGC- -5'
21721 3' -55.2 NC_004812.1 + 43939 0.71 0.767155
Target:  5'- cGGUGGUCGcuccgGUCca-GGGCGUCCCGc -3'
miRNA:   3'- -CCACCGGCua---CAGcugUCUGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 39036 0.76 0.490376
Target:  5'- cGGUGGUgaCGAgcacgccGUCGACGGGCcgCCCGc -3'
miRNA:   3'- -CCACCG--GCUa------CAGCUGUCUGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 54518 0.75 0.499878
Target:  5'- cGUGGCCGGccUCGACGGACGcguuggugCCCGg -3'
miRNA:   3'- cCACCGGCUacAGCUGUCUGUa-------GGGC- -5'
21721 3' -55.2 NC_004812.1 + 27736 0.75 0.499878
Target:  5'- cGGggGGCCGcgGUCaGCGGGCcgCCCGc -3'
miRNA:   3'- -CCa-CCGGCuaCAGcUGUCUGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 23622 0.73 0.659219
Target:  5'- aGUGGCCGGgcgcccaGACGGGCGUCCgCGu -3'
miRNA:   3'- cCACCGGCUacag---CUGUCUGUAGG-GC- -5'
21721 3' -55.2 NC_004812.1 + 5905 0.72 0.67937
Target:  5'- aGG-GGCCGccGggCGGCAGGCAgacCCCGg -3'
miRNA:   3'- -CCaCCGGCuaCa-GCUGUCUGUa--GGGC- -5'
21721 3' -55.2 NC_004812.1 + 99137 0.72 0.67937
Target:  5'- aGGUGGCCGAagacGUcucCGACGG-CcgCCCGg -3'
miRNA:   3'- -CCACCGGCUa---CA---GCUGUCuGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 15958 0.72 0.699369
Target:  5'- --cGGCCGGg--CGACGGACGcCCCGc -3'
miRNA:   3'- ccaCCGGCUacaGCUGUCUGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 44545 0.71 0.757752
Target:  5'- cGUGGcCCGGgcUCGACGGACGggCCCu -3'
miRNA:   3'- cCACC-GGCUacAGCUGUCUGUa-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.