miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 5' -56 NC_004812.1 + 196 0.66 0.905608
Target:  5'- -cGCGcGCCGc-CGggGGAGGGCCCGg- -3'
miRNA:   3'- caCGU-CGGCaaGCa-CCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 156606 0.66 0.905608
Target:  5'- -cGCGcGCCGc-CGggGGAGGGCCCGg- -3'
miRNA:   3'- caCGU-CGGCaaGCa-CCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 125705 0.66 0.905608
Target:  5'- -cGCGcGCCGc-CGggGGAGGGCCCGg- -3'
miRNA:   3'- caCGU-CGGCaaGCa-CCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 91590 0.66 0.899235
Target:  5'- gGUGCugGGUCGcgcgUCGgaaaUGGGGGACCCGg- -3'
miRNA:   3'- -CACG--UCGGCa---AGC----ACCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 47606 0.66 0.895298
Target:  5'- -gGCAGCCGcggUCGUGGgcgauaaacuccuucAGGGCgCCGg- -3'
miRNA:   3'- caCGUCGGCa--AGCACC---------------UCUUG-GGCaa -5'
21724 5' -56 NC_004812.1 + 110030 0.66 0.892627
Target:  5'- uGUGCuacccGGCCGcgCGcuaccucaUGGGGAGCCUGUc -3'
miRNA:   3'- -CACG-----UCGGCaaGC--------ACCUCUUGGGCAa -5'
21724 5' -56 NC_004812.1 + 51886 0.66 0.885786
Target:  5'- -cGCGGCCGUgggcgCGUGGcGGccacgcacGCCCGc- -3'
miRNA:   3'- caCGUCGGCAa----GCACCuCU--------UGGGCaa -5'
21724 5' -56 NC_004812.1 + 79218 0.66 0.885785
Target:  5'- -gGCGGCgGcgCuUGGAGAACCCa-- -3'
miRNA:   3'- caCGUCGgCaaGcACCUCUUGGGcaa -5'
21724 5' -56 NC_004812.1 + 13429 0.67 0.863911
Target:  5'- -gGUGGCCG-UCGUuucGGGGGACgCCGUg -3'
miRNA:   3'- caCGUCGGCaAGCA---CCUCUUG-GGCAa -5'
21724 5' -56 NC_004812.1 + 58226 0.67 0.863911
Target:  5'- -cGCGGCCGccgCGccgcccGAGGACCCGUa -3'
miRNA:   3'- caCGUCGGCaa-GCac----CUCUUGGGCAa -5'
21724 5' -56 NC_004812.1 + 26328 0.67 0.856187
Target:  5'- -cGCGGCCGcUCG-GGGGu-CCCGg- -3'
miRNA:   3'- caCGUCGGCaAGCaCCUCuuGGGCaa -5'
21724 5' -56 NC_004812.1 + 96159 0.67 0.848257
Target:  5'- -cGgGGCCG-UCGUGGG--GCCCGUc -3'
miRNA:   3'- caCgUCGGCaAGCACCUcuUGGGCAa -5'
21724 5' -56 NC_004812.1 + 87049 0.67 0.848256
Target:  5'- cUGCAGCgcaUGUUCGUGGAcGugCCGc- -3'
miRNA:   3'- cACGUCG---GCAAGCACCUcUugGGCaa -5'
21724 5' -56 NC_004812.1 + 125161 0.67 0.840126
Target:  5'- -cGCGcGCCGgggCGggaggcgGGAGGGCCCGg- -3'
miRNA:   3'- caCGU-CGGCaa-GCa------CCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 156062 0.67 0.840126
Target:  5'- -cGCGcGCCGgggCGggaggcgGGAGGGCCCGg- -3'
miRNA:   3'- caCGU-CGGCaa-GCa------CCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 139614 0.67 0.830961
Target:  5'- aGUGCAGCCGgUgGUccGGAGugacguuGACCCGg- -3'
miRNA:   3'- -CACGUCGGCaAgCA--CCUC-------UUGGGCaa -5'
21724 5' -56 NC_004812.1 + 78307 0.68 0.796746
Target:  5'- -cGCAcGCCGgggCGggggcGGAGGGCCCGg- -3'
miRNA:   3'- caCGU-CGGCaa-GCa----CCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 80589 0.68 0.796746
Target:  5'- -gGCGGCCcuggaccgCGUGGAGAACCgCGc- -3'
miRNA:   3'- caCGUCGGcaa-----GCACCUCUUGG-GCaa -5'
21724 5' -56 NC_004812.1 + 89994 0.68 0.787581
Target:  5'- cGUGCcgacGGCCuGggCGUGGAGcGGCCCGc- -3'
miRNA:   3'- -CACG----UCGG-CaaGCACCUC-UUGGGCaa -5'
21724 5' -56 NC_004812.1 + 48170 0.68 0.787581
Target:  5'- -gGCGGCCGcggCGcUGGAGAACgCGg- -3'
miRNA:   3'- caCGUCGGCaa-GC-ACCUCUUGgGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.