miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 117648 0.66 0.901405
Target:  5'- -cGGCGGGGUcgcgggccggCCGGGcgCCGGGgggugCCg -3'
miRNA:   3'- guUCGCUCCGa---------GGCCCaaGGUCUa----GG- -5'
21728 3' -56 NC_004812.1 + 39860 0.66 0.901405
Target:  5'- gGGGCcgGGGGCUCCGccauGGcgCguGGUCCu -3'
miRNA:   3'- gUUCG--CUCCGAGGC----CCaaGguCUAGG- -5'
21728 3' -56 NC_004812.1 + 74103 0.66 0.901405
Target:  5'- --cGCG-GGCcCCGGGcUCagcgAGAUCCa -3'
miRNA:   3'- guuCGCuCCGaGGCCCaAGg---UCUAGG- -5'
21728 3' -56 NC_004812.1 + 82528 0.66 0.899498
Target:  5'- --cGCGAGGCcCCGGGaggcgccgcccguggCCAGGaagcccUCCa -3'
miRNA:   3'- guuCGCUCCGaGGCCCaa-------------GGUCU------AGG- -5'
21728 3' -56 NC_004812.1 + 77391 0.66 0.894969
Target:  5'- cCAGGCGgccAGGUcggCgGGGgccUCCAGGUCUc -3'
miRNA:   3'- -GUUCGC---UCCGa--GgCCCa--AGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 135741 0.66 0.894969
Target:  5'- --cGCGAGGCcgUCCGGGaggggCCAcGAgCCc -3'
miRNA:   3'- guuCGCUCCG--AGGCCCaa---GGU-CUaGG- -5'
21728 3' -56 NC_004812.1 + 56997 0.66 0.894968
Target:  5'- gCAGGCGGuGGUgagCGGGggCCugcGGAUCCc -3'
miRNA:   3'- -GUUCGCU-CCGag-GCCCaaGG---UCUAGG- -5'
21728 3' -56 NC_004812.1 + 121173 0.66 0.894968
Target:  5'- --uGCGAGGg-CCGGGUgguguuucugCCGacGAUCCg -3'
miRNA:   3'- guuCGCUCCgaGGCCCAa---------GGU--CUAGG- -5'
21728 3' -56 NC_004812.1 + 920 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 868 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 825 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGguggCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 31769 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 146906 0.67 0.888306
Target:  5'- gGGGCGGGcGgUCCGGGUcgcguuuccUCUGGGuuUCCu -3'
miRNA:   3'- gUUCGCUC-CgAGGCCCA---------AGGUCU--AGG- -5'
21728 3' -56 NC_004812.1 + 68587 0.67 0.888306
Target:  5'- aCAGGCc-GGCccUCCGGGUgaacaGGGUCCa -3'
miRNA:   3'- -GUUCGcuCCG--AGGCCCAagg--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 31821 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 31873 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGgucgCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 31726 0.67 0.888306
Target:  5'- gGGGUccuGGGGgUCCGGGguggCCggGGGUCCu -3'
miRNA:   3'- gUUCG---CUCCgAGGCCCaa--GG--UCUAGG- -5'
21728 3' -56 NC_004812.1 + 80598 0.67 0.887627
Target:  5'- --cGCGGGGCccggCUGGGggCUcggugggGGGUCCg -3'
miRNA:   3'- guuCGCUCCGa---GGCCCaaGG-------UCUAGG- -5'
21728 3' -56 NC_004812.1 + 17605 0.67 0.881419
Target:  5'- gCGGGCGAGGCgggcCCGGGcgaaCCGc-UCCg -3'
miRNA:   3'- -GUUCGCUCCGa---GGCCCaa--GGUcuAGG- -5'
21728 3' -56 NC_004812.1 + 122348 0.67 0.881419
Target:  5'- --cGCGGGGUUCCcggcGGGggCCGGggCg -3'
miRNA:   3'- guuCGCUCCGAGG----CCCaaGGUCuaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.