miRNA display CGI


Results 21 - 40 of 624 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 11565 0.66 0.810819
Target:  5'- -aGGUCCGCCGCcgcccccGCCuccGCGCUcgccggggacacGGCGGg -3'
miRNA:   3'- ggCUAGGCGGUG-------UGGc--CGCGA------------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 76265 0.66 0.811655
Target:  5'- cCCGcgCgCGCCGCcucgaCGGCGCgcGCGGc -3'
miRNA:   3'- -GGCuaG-GCGGUGug---GCCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 28021 0.66 0.811655
Target:  5'- cCCGAgCUGCCACAUgaucagcaGGuCGCUGuccuCGGa -3'
miRNA:   3'- -GGCUaGGCGGUGUGg-------CC-GCGACu---GCC- -5'
21729 5' -59.3 NC_004812.1 + 113899 0.66 0.828066
Target:  5'- aCCGAcaggagugcUCgaGUCGCGCCuGCgaGCUGACGGc -3'
miRNA:   3'- -GGCU---------AGg-CGGUGUGGcCG--CGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 81009 0.66 0.828066
Target:  5'- gCGAUCggCGCCGCgACCaGCGC--GCGGu -3'
miRNA:   3'- gGCUAG--GCGGUG-UGGcCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 104697 0.66 0.828066
Target:  5'- gCUGGgccgCCGCCAUGCgGGCGUgcgUGGCc- -3'
miRNA:   3'- -GGCUa---GGCGGUGUGgCCGCG---ACUGcc -5'
21729 5' -59.3 NC_004812.1 + 117258 0.66 0.819939
Target:  5'- cCCGGgcCCGCCGagcgcuCCGGCggGCgggGGCGGc -3'
miRNA:   3'- -GGCUa-GGCGGUgu----GGCCG--CGa--CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 91128 0.66 0.819939
Target:  5'- gUGGUCCGCgCGCGCuCGGCcCgGGgGGg -3'
miRNA:   3'- gGCUAGGCG-GUGUG-GCCGcGaCUgCC- -5'
21729 5' -59.3 NC_004812.1 + 140597 0.66 0.819939
Target:  5'- cCUGG-CCGCCauggGCGCCGGCGCccuccUGcacCGGu -3'
miRNA:   3'- -GGCUaGGCGG----UGUGGCCGCG-----ACu--GCC- -5'
21729 5' -59.3 NC_004812.1 + 130015 0.66 0.803223
Target:  5'- gCGGUCgaGCUccacguCGCCGGCGgUGACGc -3'
miRNA:   3'- gGCUAGg-CGGu-----GUGGCCGCgACUGCc -5'
21729 5' -59.3 NC_004812.1 + 15218 0.66 0.803223
Target:  5'- gCGcgCgGCCugGCCGacugcuucGCGCagGGCGGa -3'
miRNA:   3'- gGCuaGgCGGugUGGC--------CGCGa-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 117438 0.66 0.828066
Target:  5'- uUCGAUUCGUCGgccggcCcCCGGCGCccccgggGGCGGa -3'
miRNA:   3'- -GGCUAGGCGGU------GuGGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 114405 0.66 0.828066
Target:  5'- gCCGAagaCGCCcucgACACC-GCGCgggugGACGGc -3'
miRNA:   3'- -GGCUag-GCGG----UGUGGcCGCGa----CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 147785 0.66 0.811655
Target:  5'- gCCGAggCUGCCGaggcucUCGGgGCUGGCGa -3'
miRNA:   3'- -GGCUa-GGCGGUgu----GGCCgCGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 4996 0.66 0.828066
Target:  5'- gCCG-UgCGCCGCaggGCgGGCGggGGCGGc -3'
miRNA:   3'- -GGCuAgGCGGUG---UGgCCGCgaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 48421 0.66 0.828066
Target:  5'- aCGAcCCGCCGCugCGGUaC-GACGc -3'
miRNA:   3'- gGCUaGGCGGUGugGCCGcGaCUGCc -5'
21729 5' -59.3 NC_004812.1 + 115476 0.66 0.819939
Target:  5'- gCCGcgcgcgugCgGCCGCGCCGG-GC-GGCGGc -3'
miRNA:   3'- -GGCua------GgCGGUGUGGCCgCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 13829 0.66 0.843827
Target:  5'- aCGAggaCCGCgCGCgggcaGCgGGCGCccGGCGGg -3'
miRNA:   3'- gGCUa--GGCG-GUG-----UGgCCGCGa-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 61419 0.66 0.828066
Target:  5'- uCCGAgggacCCGCgCGCcCCGGCcGuCUGAgGGc -3'
miRNA:   3'- -GGCUa----GGCG-GUGuGGCCG-C-GACUgCC- -5'
21729 5' -59.3 NC_004812.1 + 95855 0.66 0.803223
Target:  5'- aCCGGaCCGagGCGCgGGUGCgGugGGc -3'
miRNA:   3'- -GGCUaGGCggUGUGgCCGCGaCugCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.