miRNA display CGI


Results 1 - 20 of 624 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 119277 0.66 0.811655
Target:  5'- gCGGUCCcCC-CGCCGGgcggGCUGuACGGc -3'
miRNA:   3'- gGCUAGGcGGuGUGGCCg---CGAC-UGCC- -5'
21729 5' -59.3 NC_004812.1 + 82688 0.66 0.803223
Target:  5'- gCGAgcaggcgCCGCUggGCGCCGGC-C-GACGGc -3'
miRNA:   3'- gGCUa------GGCGG--UGUGGCCGcGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 41326 0.66 0.811655
Target:  5'- cCCGGUCCgGCCGCGggaUGGaGCUGGCc- -3'
miRNA:   3'- -GGCUAGG-CGGUGUg--GCCgCGACUGcc -5'
21729 5' -59.3 NC_004812.1 + 141415 0.66 0.803223
Target:  5'- gCGcgCCuGCCGCAgCguccuccucugGGCGCcGACGGa -3'
miRNA:   3'- gGCuaGG-CGGUGUgG-----------CCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 95580 0.66 0.819939
Target:  5'- aCCGcaCgGCCGCGCCcGCGCgcgGGCGcGg -3'
miRNA:   3'- -GGCuaGgCGGUGUGGcCGCGa--CUGC-C- -5'
21729 5' -59.3 NC_004812.1 + 13829 0.66 0.843827
Target:  5'- aCGAggaCCGCgCGCgggcaGCgGGCGCccGGCGGg -3'
miRNA:   3'- gGCUa--GGCG-GUG-----UGgCCGCGa-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 113046 0.66 0.811655
Target:  5'- aCGGaCgGCCGCgGCCGGCGUcggccgcGGCGGc -3'
miRNA:   3'- gGCUaGgCGGUG-UGGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 15218 0.66 0.803223
Target:  5'- gCGcgCgGCCugGCCGacugcuucGCGCagGGCGGa -3'
miRNA:   3'- gGCuaGgCGGugUGGC--------CGCGa-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 95855 0.66 0.803223
Target:  5'- aCCGGaCCGagGCGCgGGUGCgGugGGc -3'
miRNA:   3'- -GGCUaGGCggUGUGgCCGCGaCugCC- -5'
21729 5' -59.3 NC_004812.1 + 91128 0.66 0.819939
Target:  5'- gUGGUCCGCgCGCGCuCGGCcCgGGgGGg -3'
miRNA:   3'- gGCUAGGCG-GUGUG-GCCGcGaCUgCC- -5'
21729 5' -59.3 NC_004812.1 + 23453 0.66 0.811655
Target:  5'- gCCGcGUuuGCCGCGCUcGUcguccuccuGCUGGCGGu -3'
miRNA:   3'- -GGC-UAggCGGUGUGGcCG---------CGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 92573 0.66 0.811655
Target:  5'- aCGGUgaaCUGCCGC-CUGGCGCUc-CGGg -3'
miRNA:   3'- gGCUA---GGCGGUGuGGCCGCGAcuGCC- -5'
21729 5' -59.3 NC_004812.1 + 141161 0.66 0.803223
Target:  5'- cCCGGcaUCGCCGCgguucuGCUGuCGCUGGCGGu -3'
miRNA:   3'- -GGCUa-GGCGGUG------UGGCcGCGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 112754 0.66 0.800665
Target:  5'- gCGGcgCCGCCGCGCCcggacucGGCGCcgcgagccgcgcGGCGGc -3'
miRNA:   3'- gGCUa-GGCGGUGUGG-------CCGCGa-----------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 28021 0.66 0.811655
Target:  5'- cCCGAgCUGCCACAUgaucagcaGGuCGCUGuccuCGGa -3'
miRNA:   3'- -GGCUaGGCGGUGUGg-------CC-GCGACu---GCC- -5'
21729 5' -59.3 NC_004812.1 + 130015 0.66 0.803223
Target:  5'- gCGGUCgaGCUccacguCGCCGGCGgUGACGc -3'
miRNA:   3'- gGCUAGg-CGGu-----GUGGCCGCgACUGCc -5'
21729 5' -59.3 NC_004812.1 + 31998 0.66 0.800665
Target:  5'- -aGGUCCGCCACggaggcggggccgaACCGGcCGCccccCGGg -3'
miRNA:   3'- ggCUAGGCGGUG--------------UGGCC-GCGacu-GCC- -5'
21729 5' -59.3 NC_004812.1 + 76265 0.66 0.811655
Target:  5'- cCCGcgCgCGCCGCcucgaCGGCGCgcGCGGc -3'
miRNA:   3'- -GGCuaG-GCGGUGug---GCCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 11565 0.66 0.810819
Target:  5'- -aGGUCCGCCGCcgcccccGCCuccGCGCUcgccggggacacGGCGGg -3'
miRNA:   3'- ggCUAGGCGGUG-------UGGc--CGCGA------------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 147785 0.66 0.811655
Target:  5'- gCCGAggCUGCCGaggcucUCGGgGCUGGCGa -3'
miRNA:   3'- -GGCUa-GGCGGUgu----GGCCgCGACUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.