miRNA display CGI


Results 1 - 20 of 624 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 145704 1.03 0.004804
Target:  5'- cCCGA-CCGCCACACCGGCGCUGACGGa -3'
miRNA:   3'- -GGCUaGGCGGUGUGGCCGCGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 143097 0.84 0.095875
Target:  5'- cCCGG-CCGUCACGCCgugggccccgcgccuGGCGCUGACGGa -3'
miRNA:   3'- -GGCUaGGCGGUGUGG---------------CCGCGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 16642 0.82 0.121983
Target:  5'- gCCGAcgUCCGCCACGCCGcGCGCUccCGGc -3'
miRNA:   3'- -GGCU--AGGCGGUGUGGC-CGCGAcuGCC- -5'
21729 5' -59.3 NC_004812.1 + 57906 0.82 0.134705
Target:  5'- cCCGcgCCGCCGCccCCGGCGC-GGCGGu -3'
miRNA:   3'- -GGCuaGGCGGUGu-GGCCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 122281 0.8 0.176202
Target:  5'- aCCGuUCuagCGCCugGCCGGCGCgcgUGACGGg -3'
miRNA:   3'- -GGCuAG---GCGGugUGGCCGCG---ACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 18580 0.79 0.193923
Target:  5'- gCCGccgCCGCCGCACCcGCGCcGGCGGc -3'
miRNA:   3'- -GGCua-GGCGGUGUGGcCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 137073 0.79 0.198591
Target:  5'- aCGGUCCGCaucgACACCGGCGCcGcGCGGu -3'
miRNA:   3'- gGCUAGGCGg---UGUGGCCGCGaC-UGCC- -5'
21729 5' -59.3 NC_004812.1 + 45282 0.79 0.203356
Target:  5'- gUCGGcgCCGCCGCgggcagACUGGCGUUGGCGGg -3'
miRNA:   3'- -GGCUa-GGCGGUG------UGGCCGCGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 133864 0.79 0.208221
Target:  5'- aCCaGGUCCaCCACGCCGcGCGCgaGACGGg -3'
miRNA:   3'- -GG-CUAGGcGGUGUGGC-CGCGa-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 27348 0.79 0.213185
Target:  5'- gCCGGcgCCGCCGCGCCGcUGCUGGCGc -3'
miRNA:   3'- -GGCUa-GGCGGUGUGGCcGCGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 59491 0.79 0.213185
Target:  5'- gCGcgCCGCCGCGgCGGCGCggcccccGGCGGa -3'
miRNA:   3'- gGCuaGGCGGUGUgGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 65775 0.79 0.213185
Target:  5'- uCCGcgCCGCgGgCGCCGGCGCU-ACGGa -3'
miRNA:   3'- -GGCuaGGCGgU-GUGGCCGCGAcUGCC- -5'
21729 5' -59.3 NC_004812.1 + 152856 0.79 0.213185
Target:  5'- gCCGGcgCCGCCGCGCCGcUGCUGGCGc -3'
miRNA:   3'- -GGCUa-GGCGGUGUGGCcGCGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 28320 0.79 0.213185
Target:  5'- cCCGGUgggccgccuuggCCGCCAUAaaGGCGCUGACGa -3'
miRNA:   3'- -GGCUA------------GGCGGUGUggCCGCGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 55623 0.78 0.228692
Target:  5'- gCGGUCCGCgUACagccGCCGGCGCUcGCGGa -3'
miRNA:   3'- gGCUAGGCG-GUG----UGGCCGCGAcUGCC- -5'
21729 5' -59.3 NC_004812.1 + 58189 0.77 0.256645
Target:  5'- cCCGcggCCGCCGCACCGaGaCGCUG-CGGc -3'
miRNA:   3'- -GGCua-GGCGGUGUGGC-C-GCGACuGCC- -5'
21729 5' -59.3 NC_004812.1 + 97121 0.77 0.26256
Target:  5'- gCCGcgCCGCCGCGgCGGCGCgccucuccGCGGu -3'
miRNA:   3'- -GGCuaGGCGGUGUgGCCGCGac------UGCC- -5'
21729 5' -59.3 NC_004812.1 + 122917 0.77 0.264957
Target:  5'- gCCGAcggCCGCgACGCCGGUGCccgaggcgcgcguguUGGCGGu -3'
miRNA:   3'- -GGCUa--GGCGgUGUGGCCGCG---------------ACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 28563 0.77 0.268586
Target:  5'- gCGAguaCCGCCGCGCCGugcugcccGCGCUcGACGGc -3'
miRNA:   3'- gGCUa--GGCGGUGUGGC--------CGCGA-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 154071 0.77 0.268586
Target:  5'- gCGAguaCCGCCGCGCCGugcugcccGCGCUcGACGGc -3'
miRNA:   3'- gGCUa--GGCGGUGUGGC--------CGCGA-CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.