miRNA display CGI


Results 1 - 20 of 624 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 370 0.66 0.836031
Target:  5'- cUCGG-CCGCC--GCCGGCGCaucccGCGGc -3'
miRNA:   3'- -GGCUaGGCGGugUGGCCGCGac---UGCC- -5'
21729 5' -59.3 NC_004812.1 + 509 0.68 0.731321
Target:  5'- aCGG-CCGCCGCgGCCGGgGCgGGCc- -3'
miRNA:   3'- gGCUaGGCGGUG-UGGCCgCGaCUGcc -5'
21729 5' -59.3 NC_004812.1 + 540 0.67 0.785942
Target:  5'- cCCGGgcccucCCGCCucccGCcCCGGCGCgcGCGGc -3'
miRNA:   3'- -GGCUa-----GGCGG----UGuGGCCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 613 0.71 0.566726
Target:  5'- cCCGAUCCGCCGCGCgaGGgGagGACa- -3'
miRNA:   3'- -GGCUAGGCGGUGUGg-CCgCgaCUGcc -5'
21729 5' -59.3 NC_004812.1 + 645 0.67 0.749006
Target:  5'- cCCGAggcucugcguccuUCCGCCccagguucGCAccCCGGCGCUcccGCGGc -3'
miRNA:   3'- -GGCU-------------AGGCGG--------UGU--GGCCGCGAc--UGCC- -5'
21729 5' -59.3 NC_004812.1 + 703 0.74 0.387478
Target:  5'- uCCGGagcUCCGUCggcgucgGCGCCGGCGCggucgccGGCGGg -3'
miRNA:   3'- -GGCU---AGGCGG-------UGUGGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 1256 0.71 0.566726
Target:  5'- gCCGcggCCGCCcguuggucCGCCGGcCGCgGGCGGg -3'
miRNA:   3'- -GGCua-GGCGGu-------GUGGCC-GCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 1347 0.69 0.641695
Target:  5'- gCGGUCCGCCggaaggccggcuauGCaaacGCCGuGCGC-GACGGc -3'
miRNA:   3'- gGCUAGGCGG--------------UG----UGGC-CGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 1456 0.71 0.557114
Target:  5'- gCCGGgcacggCgGCgACGCCGGCGUccucGGCGGg -3'
miRNA:   3'- -GGCUa-----GgCGgUGUGGCCGCGa---CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 1759 0.7 0.586069
Target:  5'- cCCGcgCCcccucgcaGCCGCGCCccGCGCcGACGGg -3'
miRNA:   3'- -GGCuaGG--------CGGUGUGGc-CGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 1790 0.7 0.625071
Target:  5'- gCCGcUCCGCCcCGCCG-CaGCaUGGCGGa -3'
miRNA:   3'- -GGCuAGGCGGuGUGGCcG-CG-ACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 2230 0.69 0.63485
Target:  5'- gCGGcCCaGCgCACGCgCGGCGCggcGGCGGg -3'
miRNA:   3'- gGCUaGG-CG-GUGUG-GCCGCGa--CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 2841 0.68 0.731321
Target:  5'- aCGAcCC-CCGCACgCGGCGC-GACGc -3'
miRNA:   3'- gGCUaGGcGGUGUG-GCCGCGaCUGCc -5'
21729 5' -59.3 NC_004812.1 + 3336 0.69 0.644627
Target:  5'- cCCGAggggCCGCCGCGCCccGCGCcc-CGGc -3'
miRNA:   3'- -GGCUa---GGCGGUGUGGc-CGCGacuGCC- -5'
21729 5' -59.3 NC_004812.1 + 3471 0.67 0.749928
Target:  5'- gCGggCgGUCGCGCCGucaGCGC-GGCGGg -3'
miRNA:   3'- gGCuaGgCGGUGUGGC---CGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 3528 0.68 0.737873
Target:  5'- cCCGGgggcggggCCGCgGCGCCGggccggcucuucuuGCGCgccGGCGGg -3'
miRNA:   3'- -GGCUa-------GGCGgUGUGGC--------------CGCGa--CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 3705 0.73 0.438119
Target:  5'- -aGGUCgGCgGCGgCGGCGCcGGCGGa -3'
miRNA:   3'- ggCUAGgCGgUGUgGCCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 3760 0.72 0.509865
Target:  5'- gCGGcgCgGCgGCGCCGGCgacgagGCUGACGGc -3'
miRNA:   3'- gGCUa-GgCGgUGUGGCCG------CGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 4099 0.69 0.644627
Target:  5'- cCCGGcggggCCGuCCuCcCCGGCGCcGGCGGg -3'
miRNA:   3'- -GGCUa----GGC-GGuGuGGCCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 4148 0.72 0.482328
Target:  5'- gCGG-CCGCCAgG-CGGCGCUGcGCGGc -3'
miRNA:   3'- gGCUaGGCGGUgUgGCCGCGAC-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.