miRNA display CGI


Results 1 - 20 of 624 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 150709 0.75 0.342307
Target:  5'- gCGGcUCCGCC-CGCCGGCG--GACGGg -3'
miRNA:   3'- gGCU-AGGCGGuGUGGCCGCgaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 57856 0.76 0.300395
Target:  5'- gCCG--CCGCCGCGCUccagGGCGCgGGCGGg -3'
miRNA:   3'- -GGCuaGGCGGUGUGG----CCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 4670 0.76 0.307096
Target:  5'- gCCGG-CCGUCgcGCGCCGGCGCcGAgGGg -3'
miRNA:   3'- -GGCUaGGCGG--UGUGGCCGCGaCUgCC- -5'
21729 5' -59.3 NC_004812.1 + 19915 0.76 0.307096
Target:  5'- cCCGcgCCGCCGcCACC-GCGCcGGCGGc -3'
miRNA:   3'- -GGCuaGGCGGU-GUGGcCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 108397 0.76 0.307096
Target:  5'- gCGGggcUCCGCuCGCGCCGGCGCacgUGGCGcGg -3'
miRNA:   3'- gGCU---AGGCG-GUGUGGCCGCG---ACUGC-C- -5'
21729 5' -59.3 NC_004812.1 + 38584 0.76 0.31391
Target:  5'- gCgGGUCCGCCugGcCCGGCGCgggGACc- -3'
miRNA:   3'- -GgCUAGGCGGugU-GGCCGCGa--CUGcc -5'
21729 5' -59.3 NC_004812.1 + 32989 0.76 0.320839
Target:  5'- gCGGUCCGUCcgGCCGGCGUUcGCGGg -3'
miRNA:   3'- gGCUAGGCGGugUGGCCGCGAcUGCC- -5'
21729 5' -59.3 NC_004812.1 + 98696 0.75 0.327881
Target:  5'- gUCGAaCCGCCGCGCCgGGgGC-GGCGGc -3'
miRNA:   3'- -GGCUaGGCGGUGUGG-CCgCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 28552 0.75 0.327881
Target:  5'- cCCGAccUCgggCGCCGCgauguucgGCCGGCaGCUGGCGGa -3'
miRNA:   3'- -GGCU--AG---GCGGUG--------UGGCCG-CGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 123908 0.77 0.274724
Target:  5'- cCCGAcgUCCGCCauGCugCGGCGg-GGCGGa -3'
miRNA:   3'- -GGCU--AGGCGG--UGugGCCGCgaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 154071 0.77 0.268586
Target:  5'- gCGAguaCCGCCGCGCCGugcugcccGCGCUcGACGGc -3'
miRNA:   3'- gGCUa--GGCGGUGUGGC--------CGCGA-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 97121 0.77 0.26256
Target:  5'- gCCGcgCCGCCGCGgCGGCGCgccucuccGCGGu -3'
miRNA:   3'- -GGCuaGGCGGUGUgGCCGCGac------UGCC- -5'
21729 5' -59.3 NC_004812.1 + 143097 0.84 0.095875
Target:  5'- cCCGG-CCGUCACGCCgugggccccgcgccuGGCGCUGACGGa -3'
miRNA:   3'- -GGCUaGGCGGUGUGG---------------CCGCGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 16642 0.82 0.121983
Target:  5'- gCCGAcgUCCGCCACGCCGcGCGCUccCGGc -3'
miRNA:   3'- -GGCU--AGGCGGUGUGGC-CGCGAcuGCC- -5'
21729 5' -59.3 NC_004812.1 + 18580 0.79 0.193923
Target:  5'- gCCGccgCCGCCGCACCcGCGCcGGCGGc -3'
miRNA:   3'- -GGCua-GGCGGUGUGGcCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 45282 0.79 0.203356
Target:  5'- gUCGGcgCCGCCGCgggcagACUGGCGUUGGCGGg -3'
miRNA:   3'- -GGCUa-GGCGGUG------UGGCCGCGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 65775 0.79 0.213185
Target:  5'- uCCGcgCCGCgGgCGCCGGCGCU-ACGGa -3'
miRNA:   3'- -GGCuaGGCGgU-GUGGCCGCGAcUGCC- -5'
21729 5' -59.3 NC_004812.1 + 152856 0.79 0.213185
Target:  5'- gCCGGcgCCGCCGCGCCGcUGCUGGCGc -3'
miRNA:   3'- -GGCUa-GGCGGUGUGGCcGCGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 28320 0.79 0.213185
Target:  5'- cCCGGUgggccgccuuggCCGCCAUAaaGGCGCUGACGa -3'
miRNA:   3'- -GGCUA------------GGCGGUGUggCCGCGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 55623 0.78 0.228692
Target:  5'- gCGGUCCGCgUACagccGCCGGCGCUcGCGGa -3'
miRNA:   3'- gGCUAGGCG-GUG----UGGCCGCGAcUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.