miRNA display CGI


Results 41 - 60 of 624 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 110047 0.66 0.835242
Target:  5'- gCGGUgCGCgGCGacCCGGgGCUcgggcccGACGGg -3'
miRNA:   3'- gGCUAgGCGgUGU--GGCCgCGA-------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 12222 0.66 0.828066
Target:  5'- aCCacgCCGCCagcaGCACgGGCucGCUGACGc -3'
miRNA:   3'- -GGcuaGGCGG----UGUGgCCG--CGACUGCc -5'
21729 5' -59.3 NC_004812.1 + 56033 0.66 0.828066
Target:  5'- -gGGUUCGCCgACG-CGGUGCUGGCc- -3'
miRNA:   3'- ggCUAGGCGG-UGUgGCCGCGACUGcc -5'
21729 5' -59.3 NC_004812.1 + 35898 0.66 0.828066
Target:  5'- gCCG-UgCGCCGCaggGCgGGCGggGGCGGc -3'
miRNA:   3'- -GGCuAgGCGGUG---UGgCCGCgaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 113899 0.66 0.828066
Target:  5'- aCCGAcaggagugcUCgaGUCGCGCCuGCgaGCUGACGGc -3'
miRNA:   3'- -GGCU---------AGg-CGGUGUGGcCG--CGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 84905 0.66 0.828066
Target:  5'- aCCG--UCGCCGCugCGGgGCgGGCa- -3'
miRNA:   3'- -GGCuaGGCGGUGugGCCgCGaCUGcc -5'
21729 5' -59.3 NC_004812.1 + 90376 0.66 0.828066
Target:  5'- aCCGcgCCuuccugGCCuCGCUGGCugucCUGGCGGa -3'
miRNA:   3'- -GGCuaGG------CGGuGUGGCCGc---GACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 148339 0.66 0.828066
Target:  5'- uUCGAUUCGUCGgccggcCcCCGGCGCccccgggGGCGGa -3'
miRNA:   3'- -GGCUAGGCGGU------GuGGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 82498 0.66 0.828066
Target:  5'- cCCGG-CCGUCACcgacaaGCUcggGGCGCUGcugauGCGGg -3'
miRNA:   3'- -GGCUaGGCGGUG------UGG---CCGCGAC-----UGCC- -5'
21729 5' -59.3 NC_004812.1 + 81009 0.66 0.828066
Target:  5'- gCGAUCggCGCCGCgACCaGCGC--GCGGu -3'
miRNA:   3'- gGCUAG--GCGGUG-UGGcCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 100088 0.66 0.828066
Target:  5'- gCCGggCCGCCggaGCGCCuuauaucCGCgGGCGGg -3'
miRNA:   3'- -GGCuaGGCGG---UGUGGcc-----GCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 122769 0.66 0.828066
Target:  5'- aCGGUgCGCC-CGCCGaGgGUgaccgagGACGGg -3'
miRNA:   3'- gGCUAgGCGGuGUGGC-CgCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 48421 0.66 0.828066
Target:  5'- aCGAcCCGCCGCugCGGUaC-GACGc -3'
miRNA:   3'- gGCUaGGCGGUGugGCCGcGaCUGCc -5'
21729 5' -59.3 NC_004812.1 + 101920 0.66 0.828066
Target:  5'- gCGGUCgGgCCucggggccccggACGCgCGGCGCgGGCGGc -3'
miRNA:   3'- gGCUAGgC-GG------------UGUG-GCCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 114221 0.66 0.828066
Target:  5'- aCGAUgC-CCACaaaacGCCGGCGCcGGuCGGg -3'
miRNA:   3'- gGCUAgGcGGUG-----UGGCCGCGaCU-GCC- -5'
21729 5' -59.3 NC_004812.1 + 104697 0.66 0.828066
Target:  5'- gCUGGgccgCCGCCAUGCgGGCGUgcgUGGCc- -3'
miRNA:   3'- -GGCUa---GGCGGUGUGgCCGCG---ACUGcc -5'
21729 5' -59.3 NC_004812.1 + 117438 0.66 0.828066
Target:  5'- uUCGAUUCGUCGgccggcCcCCGGCGCccccgggGGCGGa -3'
miRNA:   3'- -GGCUAGGCGGU------GuGGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 61419 0.66 0.828066
Target:  5'- uCCGAgggacCCGCgCGCcCCGGCcGuCUGAgGGc -3'
miRNA:   3'- -GGCUa----GGCG-GUGuGGCCG-C-GACUgCC- -5'
21729 5' -59.3 NC_004812.1 + 114405 0.66 0.828066
Target:  5'- gCCGAagaCGCCcucgACACC-GCGCgggugGACGGc -3'
miRNA:   3'- -GGCUag-GCGG----UGUGGcCGCGa----CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 84157 0.66 0.828066
Target:  5'- aCCGAUCCGa---GCCGGCGggGAgCGa -3'
miRNA:   3'- -GGCUAGGCggugUGGCCGCgaCU-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.