miRNA display CGI


Results 21 - 40 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 3' -66.2 NC_004812.1 + 155384 0.66 0.430064
Target:  5'- cGUCCgCCaggaACCCCggggGCCGGgCCGGGCc -3'
miRNA:   3'- -UAGGgGGag--UGGGG----CGGCCgGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 65478 0.66 0.416742
Target:  5'- cGUCCCCgaCcgGCCCCGCCcccaagcgaccccacGGCCggCAGGCc -3'
miRNA:   3'- -UAGGGGgaG--UGGGGCGG---------------CCGG--GUCUG- -5'
21730 3' -66.2 NC_004812.1 + 119823 0.66 0.418394
Target:  5'- -gCCCCUgagcccgcgcccgCGCCCC-CCGGCCCGcGCc -3'
miRNA:   3'- uaGGGGGa------------GUGGGGcGGCCGGGUcUG- -5'
21730 3' -66.2 NC_004812.1 + 151265 0.66 0.438516
Target:  5'- -gCCgCCgCGcCCCCGCCGacCCCGGGCg -3'
miRNA:   3'- uaGGgGGaGU-GGGGCGGCc-GGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 36932 0.66 0.447063
Target:  5'- -gCUCCCgcaGCCCCGCgGGgaagCCGGGCg -3'
miRNA:   3'- uaGGGGGag-UGGGGCGgCCg---GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 27606 0.66 0.438516
Target:  5'- -gCCCCCgga-CCCGCCGaaGCuCCGGGCc -3'
miRNA:   3'- uaGGGGGagugGGGCGGC--CG-GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 126187 0.66 0.447063
Target:  5'- -aCCCCggCGCuCCCG-CGGCCCGGcCu -3'
miRNA:   3'- uaGGGGgaGUG-GGGCgGCCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 119576 0.66 0.430064
Target:  5'- cUUCCCCUCG-CCCGCCuuCCCcGGCa -3'
miRNA:   3'- uAGGGGGAGUgGGGCGGccGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 95353 0.66 0.430064
Target:  5'- -cCCCCCU--CCCCGCC--CCCGGAUu -3'
miRNA:   3'- uaGGGGGAguGGGGCGGccGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 60630 0.66 0.438516
Target:  5'- cGUCCCCgCcgacggUCACCUCGUCGaugccGCCCAGGu -3'
miRNA:   3'- -UAGGGG-G------AGUGGGGCGGC-----CGGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 112222 0.66 0.430064
Target:  5'- -gCCCCUUCgGCCCgGCCGGaCgCGGGg -3'
miRNA:   3'- uaGGGGGAG-UGGGgCGGCC-GgGUCUg -5'
21730 3' -66.2 NC_004812.1 + 65439 0.66 0.411812
Target:  5'- cGUCCCUCggggagggguCCCC-CCGGCCCccGGACc -3'
miRNA:   3'- -UAGGGGGagu-------GGGGcGGCCGGG--UCUG- -5'
21730 3' -66.2 NC_004812.1 + 33561 0.66 0.438516
Target:  5'- -gCCCgugCUCACCaaGCCGGCCgGGGa -3'
miRNA:   3'- uaGGGg--GAGUGGggCGGCCGGgUCUg -5'
21730 3' -66.2 NC_004812.1 + 17484 0.66 0.413451
Target:  5'- gAUCCugacggCCCUCuuCCgCGCCGGcCCCAGcCg -3'
miRNA:   3'- -UAGG------GGGAGu-GGgGCGGCC-GGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 15934 0.66 0.413451
Target:  5'- gGUCgaCCC-CGCCCUGCCGGgcuucggCCGGGCg -3'
miRNA:   3'- -UAGg-GGGaGUGGGGCGGCCg------GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 79484 0.66 0.413451
Target:  5'- -gCCUCCUCACCgaCCGCCaccGCCCccgcggGGGCa -3'
miRNA:   3'- uaGGGGGAGUGG--GGCGGc--CGGG------UCUG- -5'
21730 3' -66.2 NC_004812.1 + 109786 0.66 0.421708
Target:  5'- -gCCCCCUCgACCgggCCGaCGGCCgcCGGGCa -3'
miRNA:   3'- uaGGGGGAG-UGG---GGCgGCCGG--GUCUG- -5'
21730 3' -66.2 NC_004812.1 + 81175 0.66 0.438516
Target:  5'- -aCCCCggcacgugCUC-CCCCGCCagcaGCCUGGACg -3'
miRNA:   3'- uaGGGG--------GAGuGGGGCGGc---CGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 69838 0.66 0.444489
Target:  5'- gGUCgCCCUCGCgCCCGCgucgcgcugcgccaUGGCCgacgCGGACc -3'
miRNA:   3'- -UAGgGGGAGUG-GGGCG--------------GCCGG----GUCUG- -5'
21730 3' -66.2 NC_004812.1 + 55755 0.66 0.413451
Target:  5'- cUCCCCCgcgGCCCCGUCcucGCCCuccccGGCg -3'
miRNA:   3'- uAGGGGGag-UGGGGCGGc--CGGGu----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.