miRNA display CGI


Results 1 - 20 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 3' -66.2 NC_004812.1 + 119823 0.66 0.418394
Target:  5'- -gCCCCUgagcccgcgcccgCGCCCC-CCGGCCCGcGCc -3'
miRNA:   3'- uaGGGGGa------------GUGGGGcGGCCGGGUcUG- -5'
21730 3' -66.2 NC_004812.1 + 130387 0.66 0.464429
Target:  5'- --gCCCCUCGagUCCCGCCu-CCCAGAg -3'
miRNA:   3'- uagGGGGAGU--GGGGCGGccGGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 126420 0.66 0.429224
Target:  5'- cUCCCCCaCGCCCucgcgcgCGCCGaGCCCGc-- -3'
miRNA:   3'- uAGGGGGaGUGGG-------GCGGC-CGGGUcug -5'
21730 3' -66.2 NC_004812.1 + 79484 0.66 0.413451
Target:  5'- -gCCUCCUCACCgaCCGCCaccGCCCccgcggGGGCa -3'
miRNA:   3'- uaGGGGGAGUGG--GGCGGc--CGGG------UCUG- -5'
21730 3' -66.2 NC_004812.1 + 15934 0.66 0.413451
Target:  5'- gGUCgaCCC-CGCCCUGCCGGgcuucggCCGGGCg -3'
miRNA:   3'- -UAGg-GGGaGUGGGGCGGCCg------GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 137798 0.66 0.421708
Target:  5'- -gCCCgCCgCACaCCCGCCccGCCUGGACg -3'
miRNA:   3'- uaGGG-GGaGUG-GGGCGGc-CGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 804 0.66 0.421708
Target:  5'- --gCCCC-CGCCgCCGcCCGGCCgGGGg -3'
miRNA:   3'- uagGGGGaGUGG-GGC-GGCCGGgUCUg -5'
21730 3' -66.2 NC_004812.1 + 123477 0.66 0.421708
Target:  5'- -aCCCCCgagaccccCACCUCGgCGGCgggCCGGGCc -3'
miRNA:   3'- uaGGGGGa-------GUGGGGCgGCCG---GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 94467 0.66 0.430064
Target:  5'- uUUCCCUgggCGCCCuCGCCGGCgguuucgcggCCGGGg -3'
miRNA:   3'- uAGGGGGa--GUGGG-GCGGCCG----------GGUCUg -5'
21730 3' -66.2 NC_004812.1 + 118237 0.66 0.416742
Target:  5'- cAUCCCCCUCgccGaaacggcgaguuuccCCCCGCCcuucucuCCCAGACc -3'
miRNA:   3'- -UAGGGGGAG---U---------------GGGGCGGcc-----GGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 112222 0.66 0.430064
Target:  5'- -gCCCCUUCgGCCCgGCCGGaCgCGGGg -3'
miRNA:   3'- uaGGGGGAG-UGGGgCGGCC-GgGUCUg -5'
21730 3' -66.2 NC_004812.1 + 52298 0.66 0.421708
Target:  5'- -gCCCCCggaggCGccguCCCCGCCGucGCCCGccGGCg -3'
miRNA:   3'- uaGGGGGa----GU----GGGGCGGC--CGGGU--CUG- -5'
21730 3' -66.2 NC_004812.1 + 55755 0.66 0.413451
Target:  5'- cUCCCCCgcgGCCCCGUCcucGCCCuccccGGCg -3'
miRNA:   3'- uAGGGGGag-UGGGGCGGc--CGGGu----CUG- -5'
21730 3' -66.2 NC_004812.1 + 109786 0.66 0.421708
Target:  5'- -gCCCCCUCgACCgggCCGaCGGCCgcCGGGCa -3'
miRNA:   3'- uaGGGGGAG-UGG---GGCgGCCGG--GUCUG- -5'
21730 3' -66.2 NC_004812.1 + 65439 0.66 0.411812
Target:  5'- cGUCCCUCggggagggguCCCC-CCGGCCCccGGACc -3'
miRNA:   3'- -UAGGGGGagu-------GGGGcGGCCGGG--UCUG- -5'
21730 3' -66.2 NC_004812.1 + 80878 0.66 0.430064
Target:  5'- cUCCCCaggCGCCCaggucgCGCCGGCUCGuGAg -3'
miRNA:   3'- uAGGGGga-GUGGG------GCGGCCGGGU-CUg -5'
21730 3' -66.2 NC_004812.1 + 101212 0.66 0.414273
Target:  5'- -gCCCCgCggccgccagcaggggCGCCgCGCCGGCCUcGACg -3'
miRNA:   3'- uaGGGG-Ga--------------GUGGgGCGGCCGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 2585 0.66 0.430064
Target:  5'- -gCCUCCgacgcCGCCgCCGCCgacGGCaCCGGACu -3'
miRNA:   3'- uaGGGGGa----GUGG-GGCGG---CCG-GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 17484 0.66 0.413451
Target:  5'- gAUCCugacggCCCUCuuCCgCGCCGGcCCCAGcCg -3'
miRNA:   3'- -UAGG------GGGAGu-GGgGCGGCC-GGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 65478 0.66 0.416742
Target:  5'- cGUCCCCgaCcgGCCCCGCCcccaagcgaccccacGGCCggCAGGCc -3'
miRNA:   3'- -UAGGGGgaG--UGGGGCGG---------------CCGG--GUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.