miRNA display CGI


Results 1 - 20 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 3' -66.2 NC_004812.1 + 146216 1.06 0.000598
Target:  5'- gAUCCCCCUCACCCCGCCGGCCCAGACc -3'
miRNA:   3'- -UAGGGGGAGUGGGGCGGCCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 34874 0.82 0.037992
Target:  5'- -gCCCCCcCGCCgCgCGCCGGCCCGGGCa -3'
miRNA:   3'- uaGGGGGaGUGG-G-GCGGCCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 8052 0.81 0.042105
Target:  5'- -cCCCCCggCGCCCgGCCGGCCCGcGACc -3'
miRNA:   3'- uaGGGGGa-GUGGGgCGGCCGGGU-CUG- -5'
21730 3' -66.2 NC_004812.1 + 38953 0.81 0.042105
Target:  5'- -cCCCCCggCGCCCgGCCGGCCCGcGACc -3'
miRNA:   3'- uaGGGGGa-GUGGGgCGGCCGGGU-CUG- -5'
21730 3' -66.2 NC_004812.1 + 136963 0.8 0.047862
Target:  5'- -aCCCCCUCGCCCUGgCGGCCCAc-- -3'
miRNA:   3'- uaGGGGGAGUGGGGCgGCCGGGUcug -5'
21730 3' -66.2 NC_004812.1 + 70215 0.79 0.057226
Target:  5'- cGUCaCCgUCACCCCGCUGGCCCGGuCg -3'
miRNA:   3'- -UAGgGGgAGUGGGGCGGCCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 139592 0.78 0.070108
Target:  5'- -aCCCCUUCACCCC-CCGGCUCgAGGCu -3'
miRNA:   3'- uaGGGGGAGUGGGGcGGCCGGG-UCUG- -5'
21730 3' -66.2 NC_004812.1 + 84078 0.77 0.077554
Target:  5'- uUCCCgUUCGCCgcgggCGCCGGCCCGGACc -3'
miRNA:   3'- uAGGGgGAGUGGg----GCGGCCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 95225 0.77 0.081556
Target:  5'- gGUUUCCCUCACCCCGCCGccccGCCCucucGGAUa -3'
miRNA:   3'- -UAGGGGGAGUGGGGCGGC----CGGG----UCUG- -5'
21730 3' -66.2 NC_004812.1 + 139840 0.77 0.08793
Target:  5'- -gCCCCCUCACCCU-CCGGCCCccGCg -3'
miRNA:   3'- uaGGGGGAGUGGGGcGGCCGGGucUG- -5'
21730 3' -66.2 NC_004812.1 + 26976 0.76 0.094776
Target:  5'- -gCCCUCUCcgacgaggGCCCCGCCGGCgCCGGGg -3'
miRNA:   3'- uaGGGGGAG--------UGGGGCGGCCG-GGUCUg -5'
21730 3' -66.2 NC_004812.1 + 152485 0.76 0.094776
Target:  5'- -gCCCUCUCcgacgaggGCCCCGCCGGCgCCGGGg -3'
miRNA:   3'- uaGGGGGAG--------UGGGGCGGCCG-GGUCUg -5'
21730 3' -66.2 NC_004812.1 + 28012 0.76 0.099617
Target:  5'- cUCCCCC--GCCCCGCCcGCCUGGACc -3'
miRNA:   3'- uAGGGGGagUGGGGCGGcCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 153521 0.76 0.099617
Target:  5'- cUCCCCC--GCCCCGCCcGCCUGGACc -3'
miRNA:   3'- uAGGGGGagUGGGGCGGcCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 65703 0.76 0.101871
Target:  5'- cGUCCgagaUCCUCACCCCGCCGGagcucgugaccguCCCGGAg -3'
miRNA:   3'- -UAGG----GGGAGUGGGGCGGCC-------------GGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 91114 0.75 0.111927
Target:  5'- -gUCCCCUCGCCCCcgugguccgcgcgcGCuCGGCCCGGGg -3'
miRNA:   3'- uaGGGGGAGUGGGG--------------CG-GCCGGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 49859 0.75 0.11276
Target:  5'- -cCCUCCUCcgACCCCcCCGcGCCCGGACg -3'
miRNA:   3'- uaGGGGGAG--UGGGGcGGC-CGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 116103 0.74 0.124423
Target:  5'- -cCCCCCUCcccucccccGCgCCCGCCcucggGGCCCGGGCc -3'
miRNA:   3'- uaGGGGGAG---------UG-GGGCGG-----CCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 138678 0.74 0.12751
Target:  5'- -aCCCCCUCuccccCCCCGaCCGggccucgcGCCCGGACg -3'
miRNA:   3'- uaGGGGGAGu----GGGGC-GGC--------CGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 72433 0.74 0.132919
Target:  5'- -gCCCCCgcgucgccguuggaUCGcuCCCCGCCGGCUCGGAUc -3'
miRNA:   3'- uaGGGGG--------------AGU--GGGGCGGCCGGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.