miRNA display CGI


Results 1 - 20 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 3' -66.2 NC_004812.1 + 98 0.66 0.455701
Target:  5'- -gCUCCCg-GCCCCGCgCGcGCCCcGGCc -3'
miRNA:   3'- uaGGGGGagUGGGGCG-GC-CGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 274 0.68 0.329543
Target:  5'- gGUCUCCCgcgcgCGCUCCGCCGccGUCCGGcCg -3'
miRNA:   3'- -UAGGGGGa----GUGGGGCGGC--CGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 431 0.69 0.270748
Target:  5'- -cCCCCCUCcccuuCCUCGCgCGGCCCcGGu -3'
miRNA:   3'- uaGGGGGAGu----GGGGCG-GCCGGGuCUg -5'
21730 3' -66.2 NC_004812.1 + 436 0.67 0.358546
Target:  5'- -gCUCUCgcgCGCgCCCGCCGcgaGCCCGGGCc -3'
miRNA:   3'- uaGGGGGa--GUG-GGGCGGC---CGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 578 0.67 0.39724
Target:  5'- cGUCCCgCggcgCGgCCC-CCGGCcCCGGGCg -3'
miRNA:   3'- -UAGGGgGa---GUgGGGcGGCCG-GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 679 0.66 0.447063
Target:  5'- -aCCCCggCGCuCCCG-CGGCCCGGcCu -3'
miRNA:   3'- uaGGGGgaGUG-GGGCgGCCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 744 0.67 0.365313
Target:  5'- cUCCCCCgccgcgcgCGCCUCGCCucccggcgccgcgGGCCCcuucuGGGCc -3'
miRNA:   3'- uAGGGGGa-------GUGGGGCGG-------------CCGGG-----UCUG- -5'
21730 3' -66.2 NC_004812.1 + 804 0.66 0.421708
Target:  5'- --gCCCC-CGCCgCCGcCCGGCCgGGGg -3'
miRNA:   3'- uagGGGGaGUGG-GGC-GGCCGGgUCUg -5'
21730 3' -66.2 NC_004812.1 + 912 0.66 0.429224
Target:  5'- cUCCCCCaCGCCCucgcgcgCGCCGaGCCCGc-- -3'
miRNA:   3'- uAGGGGGaGUGGG-------GCGGC-CGGGUcug -5'
21730 3' -66.2 NC_004812.1 + 988 0.66 0.438516
Target:  5'- -gCCCCCgaucUCACuaggCCUGcCCGGCCgGGGCc -3'
miRNA:   3'- uaGGGGG----AGUG----GGGC-GGCCGGgUCUG- -5'
21730 3' -66.2 NC_004812.1 + 1061 0.68 0.342377
Target:  5'- -cCCCCCUC-CCCCGCCccucccGCCCuccuggguaccuGGCg -3'
miRNA:   3'- uaGGGGGAGuGGGGCGGc-----CGGGu-----------CUG- -5'
21730 3' -66.2 NC_004812.1 + 1094 0.73 0.162479
Target:  5'- gGUCUCCUcCugCCCGgCGGCCCGGGu -3'
miRNA:   3'- -UAGGGGGaGugGGGCgGCCGGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 1189 0.66 0.430064
Target:  5'- cGUCgCCgUCGCCgCCGCCaccacgcccGGCCCGGcCc -3'
miRNA:   3'- -UAGgGGgAGUGG-GGCGG---------CCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 1265 0.68 0.322568
Target:  5'- --gCCCgUUGgUCCGCCGGCCgCGGGCg -3'
miRNA:   3'- uagGGGgAGUgGGGCGGCCGG-GUCUG- -5'
21730 3' -66.2 NC_004812.1 + 1316 0.73 0.162479
Target:  5'- -aCCCCCggGCCCCGCCGcGCCCc--- -3'
miRNA:   3'- uaGGGGGagUGGGGCGGC-CGGGucug -5'
21730 3' -66.2 NC_004812.1 + 1368 0.71 0.210699
Target:  5'- -cCCCCCUCGgCCCGCCcucgcgcaccaaGGCCCGc-- -3'
miRNA:   3'- uaGGGGGAGUgGGGCGG------------CCGGGUcug -5'
21730 3' -66.2 NC_004812.1 + 1584 0.67 0.39724
Target:  5'- gGUCCCCCccgCAcggcuCCCCGCC--UCCGGGCg -3'
miRNA:   3'- -UAGGGGGa--GU-----GGGGCGGccGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 1764 0.66 0.438516
Target:  5'- -gCCCCCUCGCa--GCCGcGCCCcgcgccGACg -3'
miRNA:   3'- uaGGGGGAGUGgggCGGC-CGGGu-----CUG- -5'
21730 3' -66.2 NC_004812.1 + 1845 0.69 0.270748
Target:  5'- -cUCCCCUCuCCCCGCgCaGCCCcGGCc -3'
miRNA:   3'- uaGGGGGAGuGGGGCG-GcCGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 1898 0.67 0.36607
Target:  5'- -cCCgCCCgcggCACCCCGUauaugGGCCgAGGCu -3'
miRNA:   3'- uaGG-GGGa---GUGGGGCGg----CCGGgUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.