Results 1 - 20 of 435 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21730 | 3' | -66.2 | NC_004812.1 | + | 34317 | 0.72 | 0.183032 |
Target: 5'- -gCCCCCgUCACgCgCGCCGGCC-AGGCg -3' miRNA: 3'- uaGGGGG-AGUGgG-GCGGCCGGgUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 3409 | 0.73 | 0.158626 |
Target: 5'- -gCCCgCCUCcCCCCGgCGGCCCuccGGCg -3' miRNA: 3'- uaGGG-GGAGuGGGGCgGCCGGGu--CUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 48968 | 0.73 | 0.158626 |
Target: 5'- -gCCCCCggcgacgUGCCCCGCgacgCGGCCgCAGACg -3' miRNA: 3'- uaGGGGGa------GUGGGGCG----GCCGG-GUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 1094 | 0.73 | 0.162479 |
Target: 5'- gGUCUCCUcCugCCCGgCGGCCCGGGu -3' miRNA: 3'- -UAGGGGGaGugGGGCgGCCGGGUCUg -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 126824 | 0.73 | 0.162479 |
Target: 5'- -aCCCCCggGCCCCGCCGcGCCCc--- -3' miRNA: 3'- uaGGGGGagUGGGGCGGC-CGGGucug -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 151645 | 0.73 | 0.162479 |
Target: 5'- -cCCCgCCUCGCCgCCGCCGGCCg---- -3' miRNA: 3'- uaGGG-GGAGUGG-GGCGGCCGGgucug -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 3490 | 0.72 | 0.170439 |
Target: 5'- -gCCCCC-CGCgCCCGCCcccggggcgGcGCCCAGACa -3' miRNA: 3'- uaGGGGGaGUG-GGGCGG---------C-CGGGUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 106986 | 0.72 | 0.174548 |
Target: 5'- cUCCCCCUCccGCCCCGCgGGCgCCc--- -3' miRNA: 3'- uAGGGGGAG--UGGGGCGgCCG-GGucug -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 3587 | 0.72 | 0.178745 |
Target: 5'- -gCCgUCCUCGCCCagGCCcuGGCCCAGGCc -3' miRNA: 3'- uaGG-GGGAGUGGGg-CGG--CCGGGUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 119864 | 0.73 | 0.147558 |
Target: 5'- uUCCCCC-CGCCucccgagcgcgCCGCCGGCCCgcAGAg -3' miRNA: 3'- uAGGGGGaGUGG-----------GGCGGCCGGG--UCUg -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 140110 | 0.73 | 0.147558 |
Target: 5'- -gCCCCCgCGCCCC-CCGGCCgguggCGGACa -3' miRNA: 3'- uaGGGGGaGUGGGGcGGCCGG-----GUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 138678 | 0.74 | 0.12751 |
Target: 5'- -aCCCCCUCuccccCCCCGaCCGggccucgcGCCCGGACg -3' miRNA: 3'- uaGGGGGAGu----GGGGC-GGC--------CGGGUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 8052 | 0.81 | 0.042105 |
Target: 5'- -cCCCCCggCGCCCgGCCGGCCCGcGACc -3' miRNA: 3'- uaGGGGGa-GUGGGgCGGCCGGGU-CUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 139592 | 0.78 | 0.070108 |
Target: 5'- -aCCCCUUCACCCC-CCGGCUCgAGGCu -3' miRNA: 3'- uaGGGGGAGUGGGGcGGCCGGG-UCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 139840 | 0.77 | 0.08793 |
Target: 5'- -gCCCCCUCACCCU-CCGGCCCccGCg -3' miRNA: 3'- uaGGGGGAGUGGGGcGGCCGGGucUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 152485 | 0.76 | 0.094776 |
Target: 5'- -gCCCUCUCcgacgaggGCCCCGCCGGCgCCGGGg -3' miRNA: 3'- uaGGGGGAG--------UGGGGCGGCCG-GGUCUg -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 153521 | 0.76 | 0.099617 |
Target: 5'- cUCCCCC--GCCCCGCCcGCCUGGACc -3' miRNA: 3'- uAGGGGGagUGGGGCGGcCGGGUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 91114 | 0.75 | 0.111927 |
Target: 5'- -gUCCCCUCGCCCCcgugguccgcgcgcGCuCGGCCCGGGg -3' miRNA: 3'- uaGGGGGAGUGGGG--------------CG-GCCGGGUCUg -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 49859 | 0.75 | 0.11276 |
Target: 5'- -cCCUCCUCcgACCCCcCCGcGCCCGGACg -3' miRNA: 3'- uaGGGGGAG--UGGGGcGGC-CGGGUCUG- -5' |
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21730 | 3' | -66.2 | NC_004812.1 | + | 116103 | 0.74 | 0.124423 |
Target: 5'- -cCCCCCUCcccucccccGCgCCCGCCcucggGGCCCGGGCc -3' miRNA: 3'- uaGGGGGAG---------UG-GGGCGG-----CCGGGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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