Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21732 | 5' | -52.1 | NC_004812.1 | + | 152421 | 0.69 | 0.936539 |
Target: 5'- cCGCGggGGCgCCCUcgGcGUcCACGUGGCGg -3' miRNA: 3'- -GUGCa-CUG-GGGAuaC-UA-GUGCACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 149380 | 1.09 | 0.007489 |
Target: 5'- uCACGUGACCCCUAUGAUCACGUGACGa -3' miRNA: 3'- -GUGCACUGGGGAUACUAGUGCACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 149202 | 0.68 | 0.965275 |
Target: 5'- gACG-GAUCaCCg--GGUCACGUGACu -3' miRNA: 3'- gUGCaCUGG-GGauaCUAGUGCACUGc -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 145175 | 0.67 | 0.976771 |
Target: 5'- gCACGUGcACgCCUggGGUCACGUcgucaucagcacGGCGu -3' miRNA: 3'- -GUGCAC-UGgGGAuaCUAGUGCA------------CUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 135955 | 0.66 | 0.987659 |
Target: 5'- aACGUGACCgacgggagccugcUCUcgGAggaggcggugcggCGCGUGACGg -3' miRNA: 3'- gUGCACUGG-------------GGAuaCUa------------GUGCACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 134494 | 0.66 | 0.986874 |
Target: 5'- gCGCGUGcCCCCg--GAUCAuCGccaugGACGc -3' miRNA: 3'- -GUGCACuGGGGauaCUAGU-GCa----CUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 132919 | 0.71 | 0.895916 |
Target: 5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaGGCGa -3' miRNA: 3'- -GUGCACUGGGgaUACUAGuGCA--------CUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 132738 | 0.73 | 0.809513 |
Target: 5'- uCACGUGAUCauaggGGUCACGUGACc -3' miRNA: 3'- -GUGCACUGGggauaCUAGUGCACUGc -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 125973 | 0.67 | 0.971437 |
Target: 5'- uGCGUGACggCCCUGacgggggcgcUGuGUCAgGUGGCGg -3' miRNA: 3'- gUGCACUG--GGGAU----------AC-UAGUgCACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 121520 | 0.69 | 0.936539 |
Target: 5'- cCGCGggGGCgCCCUcgGcGUcCACGUGGCGg -3' miRNA: 3'- -GUGCa-CUG-GGGAuaC-UA-GUGCACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 118450 | 0.69 | 0.950274 |
Target: 5'- cCGCG-GGCCCCggcgcgGUGcaggcCACGUGGCGc -3' miRNA: 3'- -GUGCaCUGGGGa-----UACua---GUGCACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 115072 | 0.69 | 0.950274 |
Target: 5'- gACGagaagcagGACCCCcagGAUCACGUGgGCGu -3' miRNA: 3'- gUGCa-------CUGGGGauaCUAGUGCAC-UGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 111695 | 0.68 | 0.961868 |
Target: 5'- gACGUGGCCgCUGgcGAUCugGgccacgGGCGa -3' miRNA: 3'- gUGCACUGGgGAUa-CUAGugCa-----CUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 96655 | 0.66 | 0.986874 |
Target: 5'- cCGCGcGACCCC-GUGGgccagCAgGUGACc -3' miRNA: 3'- -GUGCaCUGGGGaUACUa----GUgCACUGc -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 95058 | 0.68 | 0.967529 |
Target: 5'- uCACGUGACCCg-GUGAUC-CGUcguugcuaggcaacGACa -3' miRNA: 3'- -GUGCACUGGGgaUACUAGuGCA--------------CUGc -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 94877 | 0.73 | 0.791345 |
Target: 5'- uCACGUGAUCaUCgg-GGUCACGUGACc -3' miRNA: 3'- -GUGCACUGG-GGauaCUAGUGCACUGc -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 94038 | 0.67 | 0.976771 |
Target: 5'- gGCGUGugCCCcGUGcugCGCGUgcucGACGu -3' miRNA: 3'- gUGCACugGGGaUACua-GUGCA----CUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 90712 | 0.66 | 0.988407 |
Target: 5'- cCACG-GGCCCCUGcgcuUGGggGCGaUGAUGg -3' miRNA: 3'- -GUGCaCUGGGGAU----ACUagUGC-ACUGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 83502 | 0.67 | 0.976771 |
Target: 5'- cCGCGUGACCgUUAUGGacCugGUGcugGCGg -3' miRNA: 3'- -GUGCACUGGgGAUACUa-GugCAC---UGC- -5' |
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21732 | 5' | -52.1 | NC_004812.1 | + | 83233 | 0.71 | 0.895916 |
Target: 5'- --gGUGGCCCCcggGcgCugGUGGCGg -3' miRNA: 3'- gugCACUGGGGauaCuaGugCACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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