miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21734 5' -52.3 NC_004813.1 + 56360 0.72 0.531926
Target:  5'- uUACGC-UGCCGAGCAUuuugguaaGACAugGgCCg -3'
miRNA:   3'- cAUGCGuGCGGUUCGUA--------CUGUugC-GG- -5'
21734 5' -52.3 NC_004813.1 + 48408 0.67 0.832601
Target:  5'- -aAUGCA-GCCAGGgAUG-CAACGaCCg -3'
miRNA:   3'- caUGCGUgCGGUUCgUACuGUUGC-GG- -5'
21734 5' -52.3 NC_004813.1 + 48324 0.66 0.850449
Target:  5'- --cCGCcUGCCGGGC-UGACuccGAUGCCu -3'
miRNA:   3'- cauGCGuGCGGUUCGuACUG---UUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 45584 0.68 0.780253
Target:  5'- -aGCGCACGCCcuucaccacccgcGGCGUGuccCAuuucaccuGCGCCa -3'
miRNA:   3'- caUGCGUGCGGu------------UCGUACu--GU--------UGCGG- -5'
21734 5' -52.3 NC_004813.1 + 44676 0.75 0.35452
Target:  5'- -aGCGCAuCGCCGAGCAgaaaucacUGAgAACGUCc -3'
miRNA:   3'- caUGCGU-GCGGUUCGU--------ACUgUUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 42118 0.72 0.553811
Target:  5'- -gGCGCAcacCGCCGGGCAU----GCGCCa -3'
miRNA:   3'- caUGCGU---GCGGUUCGUAcuguUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 42038 0.72 0.553811
Target:  5'- -gGCGCAUGCCcGGCGgUGu--GCGCCu -3'
miRNA:   3'- caUGCGUGCGGuUCGU-ACuguUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 38340 0.66 0.875407
Target:  5'- cGUGCaCugGCUgcGGGUAUGGgCGugGCCc -3'
miRNA:   3'- -CAUGcGugCGG--UUCGUACU-GUugCGG- -5'
21734 5' -52.3 NC_004813.1 + 37846 0.7 0.642123
Target:  5'- -gGCGgACGUCAGGCugcUGcggcagccagggaGCAGCGCCg -3'
miRNA:   3'- caUGCgUGCGGUUCGu--AC-------------UGUUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 32592 0.72 0.521101
Target:  5'- uGUAUGC-CGCCGGGC-UGGCGgccACGCa -3'
miRNA:   3'- -CAUGCGuGCGGUUCGuACUGU---UGCGg -5'
21734 5' -52.3 NC_004813.1 + 31509 0.67 0.794347
Target:  5'- -aGCGCAUuuUuacGCAUgGACAGCGCCa -3'
miRNA:   3'- caUGCGUGcgGuu-CGUA-CUGUUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 31022 0.68 0.763762
Target:  5'- cGUGUGCACGcCCAGGUGUcgGGCggUGCUg -3'
miRNA:   3'- -CAUGCGUGC-GGUUCGUA--CUGuuGCGG- -5'
21734 5' -52.3 NC_004813.1 + 29359 0.71 0.575955
Target:  5'- -cAUGCGC-CCAGGCAUGGCcccaGCCc -3'
miRNA:   3'- caUGCGUGcGGUUCGUACUGuug-CGG- -5'
21734 5' -52.3 NC_004813.1 + 29241 0.66 0.86734
Target:  5'- -aGCGCGCugcaggauaucGuCCAGGC-UGAC-GCGCCu -3'
miRNA:   3'- caUGCGUG-----------C-GGUUCGuACUGuUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 28426 0.68 0.753268
Target:  5'- -cACGCuggcUGCCGGGaucaugAUGACGGCGCUg -3'
miRNA:   3'- caUGCGu---GCGGUUCg-----UACUGUUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 28077 0.68 0.784313
Target:  5'- gGUGCGUgaacuGCGCCAGcuuauaagccGCAUc-CAGCGCCa -3'
miRNA:   3'- -CAUGCG-----UGCGGUU----------CGUAcuGUUGCGG- -5'
21734 5' -52.3 NC_004813.1 + 27620 0.68 0.753268
Target:  5'- -aACGCACucaGCCGGGUAUGGuuCAGC-CCa -3'
miRNA:   3'- caUGCGUG---CGGUUCGUACU--GUUGcGG- -5'
21734 5' -52.3 NC_004813.1 + 24522 0.7 0.631998
Target:  5'- aUGCGaccagguuaACGCCAuugAGCGUGAUAagGCGCUg -3'
miRNA:   3'- cAUGCg--------UGCGGU---UCGUACUGU--UGCGG- -5'
21734 5' -52.3 NC_004813.1 + 23192 0.66 0.86734
Target:  5'- aUAC-CGgGCCAuGCGUGACGucugGCGCa -3'
miRNA:   3'- cAUGcGUgCGGUuCGUACUGU----UGCGg -5'
21734 5' -52.3 NC_004813.1 + 22311 0.66 0.850449
Target:  5'- -cGCGUuuaGCGCCAcucuucccGCAUGGCGcaaaauCGCCg -3'
miRNA:   3'- caUGCG---UGCGGUu-------CGUACUGUu-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.