Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21737 | 5' | -58.1 | NC_004813.1 | + | 35973 | 0.69 | 0.388127 |
Target: 5'- -gCGCUUCcGUgGGUGGUUUUcaGCCUGa -3' miRNA: 3'- ggGCGAAGuCAgCCACCGAGA--CGGAC- -5' |
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21737 | 5' | -58.1 | NC_004813.1 | + | 32085 | 0.76 | 0.137472 |
Target: 5'- gCCUGUUUCAGgCGGUGGCUgaGCCc- -3' miRNA: 3'- -GGGCGAAGUCaGCCACCGAgaCGGac -5' |
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21737 | 5' | -58.1 | NC_004813.1 | + | 26052 | 0.69 | 0.388127 |
Target: 5'- aCCUGCaugUCAGUaaUGGUGGCaUUcGCCUGu -3' miRNA: 3'- -GGGCGa--AGUCA--GCCACCG-AGaCGGAC- -5' |
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21737 | 5' | -58.1 | NC_004813.1 | + | 23580 | 1.09 | 0.000567 |
Target: 5'- uCCCGCUUCAGUCGGUGGCUCUGCCUGu -3' miRNA: 3'- -GGGCGAAGUCAGCCACCGAGACGGAC- -5' |
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21737 | 5' | -58.1 | NC_004813.1 | + | 21878 | 0.7 | 0.345793 |
Target: 5'- aUgGCaggUCAgugcGUCGGUGGCUCUGCUg- -3' miRNA: 3'- gGgCGa--AGU----CAGCCACCGAGACGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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