miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21743 5' -50.6 NC_004813.1 + 45350 0.66 0.946301
Target:  5'- aGCGGAacagGcGACGGCGCagUGACGGc -3'
miRNA:   3'- gUGCCUauaaC-UUGCCGUGg-ACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 48069 0.66 0.936079
Target:  5'- aCACGG-UGaUGGuccCGGCAUgUGACGGc -3'
miRNA:   3'- -GUGCCuAUaACUu--GCCGUGgACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 45503 0.66 0.935538
Target:  5'- cCGCGGGUggUGAaggGCGugcgcuucagucuGCGCCUGACc- -3'
miRNA:   3'- -GUGCCUAuaACU---UGC-------------CGUGGACUGcu -5'
21743 5' -50.6 NC_004813.1 + 34480 0.66 0.930534
Target:  5'- gGCGGAUAUUGA-CGuCAgCaUGACGGg -3'
miRNA:   3'- gUGCCUAUAACUuGCcGUgG-ACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 47433 0.66 0.930534
Target:  5'- aGCGGGUAUcgcUGuaAugGGuCAgCUGGCGAu -3'
miRNA:   3'- gUGCCUAUA---AC--UugCC-GUgGACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 44346 0.66 0.924697
Target:  5'- aGCGG-UAUcugGGACGGCAgCCUGAaacCGGc -3'
miRNA:   3'- gUGCCuAUAa--CUUGCCGU-GGACU---GCU- -5'
21743 5' -50.6 NC_004813.1 + 41929 0.66 0.924697
Target:  5'- gCGCGGGUGUgagaUGcGCGGCAUgguggcuaauuUUGGCGGu -3'
miRNA:   3'- -GUGCCUAUA----ACuUGCCGUG-----------GACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 32095 0.67 0.912151
Target:  5'- gGCGGuggcUGAGCccuuugccGGCGCCUGGCa- -3'
miRNA:   3'- gUGCCuauaACUUG--------CCGUGGACUGcu -5'
21743 5' -50.6 NC_004813.1 + 20129 0.67 0.898451
Target:  5'- uCGCGaGUugccaGAAUGGCAUCUGAUGAg -3'
miRNA:   3'- -GUGCcUAuaa--CUUGCCGUGGACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 18688 0.68 0.8758
Target:  5'- aGCGGAggggauUGUUGAA-GGCAUgCUGAUGAu -3'
miRNA:   3'- gUGCCU------AUAACUUgCCGUG-GACUGCU- -5'
21743 5' -50.6 NC_004813.1 + 31083 1.1 0.002821
Target:  5'- aCACGGAUAUUGAACGGCACCUGACGAa -3'
miRNA:   3'- -GUGCCUAUAACUUGCCGUGGACUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.