miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21749 5' -54 NC_004813.1 + 45566 0.66 0.773739
Target:  5'- cGUCUGGUgaccaccgccaucAccgcggauacagaGCACCGUUuCAGCGgucUGCCg -3'
miRNA:   3'- aCAGGCCG-------------U-------------UGUGGCAA-GUCGU---ACGG- -5'
21749 5' -54 NC_004813.1 + 29995 0.66 0.774752
Target:  5'- aGUuuGGCAguGCGcucCCGUUucucuggCAGCAUGaCCa -3'
miRNA:   3'- aCAggCCGU--UGU---GGCAA-------GUCGUAC-GG- -5'
21749 5' -54 NC_004813.1 + 33166 0.66 0.775764
Target:  5'- cUGgCCGGCGgugauGCACUGUaucuUCAGCA-GCa -3'
miRNA:   3'- -ACaGGCCGU-----UGUGGCA----AGUCGUaCGg -5'
21749 5' -54 NC_004813.1 + 14758 0.66 0.805372
Target:  5'- --aCCugacGCGaaACAUCGUUCAGCAUcgGCCa -3'
miRNA:   3'- acaGGc---CGU--UGUGGCAAGUCGUA--CGG- -5'
21749 5' -54 NC_004813.1 + 5695 0.66 0.805372
Target:  5'- aUGUUaCGGCAuaaaGCCaugaUUCAGUGUGCCc -3'
miRNA:   3'- -ACAG-GCCGUug--UGGc---AAGUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 28729 0.66 0.80441
Target:  5'- --aCCGG--ACACCGUauucggaUCGGC-UGCCa -3'
miRNA:   3'- acaGGCCguUGUGGCA-------AGUCGuACGG- -5'
21749 5' -54 NC_004813.1 + 21981 0.66 0.785799
Target:  5'- -aUCCaGGgAACACCGc-CAGCAgaGCCa -3'
miRNA:   3'- acAGG-CCgUUGUGGCaaGUCGUa-CGG- -5'
21749 5' -54 NC_004813.1 + 45200 0.66 0.785799
Target:  5'- gGUUCaccguGGCGGCACCGgucucCGGCAgUGUCa -3'
miRNA:   3'- aCAGG-----CCGUUGUGGCaa---GUCGU-ACGG- -5'
21749 5' -54 NC_004813.1 + 40787 0.66 0.765578
Target:  5'- gGUCCGGCcuCcCCcaUCAGCccgGCCc -3'
miRNA:   3'- aCAGGCCGuuGuGGcaAGUCGua-CGG- -5'
21749 5' -54 NC_004813.1 + 46347 0.67 0.723556
Target:  5'- --aCCGGCAACAUag---GGUAUGCCa -3'
miRNA:   3'- acaGGCCGUUGUGgcaagUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 30349 0.67 0.755252
Target:  5'- cGUCCGGCAACcggaaACCGguggugaaaaUC-GCAucuucUGCCg -3'
miRNA:   3'- aCAGGCCGUUG-----UGGCa---------AGuCGU-----ACGG- -5'
21749 5' -54 NC_004813.1 + 45301 0.67 0.755252
Target:  5'- cGUCCGGgaaAACACgGa-CGGCAccuuUGCCa -3'
miRNA:   3'- aCAGGCCg--UUGUGgCaaGUCGU----ACGG- -5'
21749 5' -54 NC_004813.1 + 38782 0.67 0.744799
Target:  5'- ----gGGCAGCcguguACCGUgcUCAGCAgGCCg -3'
miRNA:   3'- acaggCCGUUG-----UGGCA--AGUCGUaCGG- -5'
21749 5' -54 NC_004813.1 + 19713 0.67 0.732103
Target:  5'- uUGUCUGGUGACAguagcuauaccaCGUUaCAGCGUGUUg -3'
miRNA:   3'- -ACAGGCCGUUGUg-----------GCAA-GUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 27622 0.67 0.701944
Target:  5'- aUGUCCGGgaaaaacaaAACAgCG-UCAGCcauUGCCg -3'
miRNA:   3'- -ACAGGCCg--------UUGUgGCaAGUCGu--ACGG- -5'
21749 5' -54 NC_004813.1 + 27304 0.68 0.657979
Target:  5'- -cUCCGGCAGCGUCGggucCGGCAUaCCa -3'
miRNA:   3'- acAGGCCGUUGUGGCaa--GUCGUAcGG- -5'
21749 5' -54 NC_004813.1 + 37095 0.68 0.6469
Target:  5'- aGUCUGGcCAGCGCCaGUguuuUCAGaucuuuUGCCa -3'
miRNA:   3'- aCAGGCC-GUUGUGG-CA----AGUCgu----ACGG- -5'
21749 5' -54 NC_004813.1 + 17996 0.68 0.669035
Target:  5'- aUGUCCGGCAuccCACUGagCAGaCGUGa- -3'
miRNA:   3'- -ACAGGCCGUu--GUGGCaaGUC-GUACgg -5'
21749 5' -54 NC_004813.1 + 48657 0.68 0.691027
Target:  5'- gGUCCGGCAGguCCG--CAGgG-GCCg -3'
miRNA:   3'- aCAGGCCGUUguGGCaaGUCgUaCGG- -5'
21749 5' -54 NC_004813.1 + 42673 0.69 0.602547
Target:  5'- cUGUCUGGCGuCACCGccacuggCAcGCAucUGCCu -3'
miRNA:   3'- -ACAGGCCGUuGUGGCaa-----GU-CGU--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.