miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21749 5' -54 NC_004813.1 + 38660 1.13 0.000747
Target:  5'- cUGUCCGGCAACACCGUUCAGCAUGCCg -3'
miRNA:   3'- -ACAGGCCGUUGUGGCAAGUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 21395 0.75 0.30385
Target:  5'- aGUaCGGUGACACCGggcggugCAGCAUGCa -3'
miRNA:   3'- aCAgGCCGUUGUGGCaa-----GUCGUACGg -5'
21749 5' -54 NC_004813.1 + 45491 0.75 0.319355
Target:  5'- cUG-CCGGagggauGACGCUGUUCAGgGUGCCu -3'
miRNA:   3'- -ACaGGCCg-----UUGUGGCAAGUCgUACGG- -5'
21749 5' -54 NC_004813.1 + 31115 0.72 0.414972
Target:  5'- aG-CCGGCAGCACCGcccgacaccUgGGCGUGCa -3'
miRNA:   3'- aCaGGCCGUUGUGGCa--------AgUCGUACGg -5'
21749 5' -54 NC_004813.1 + 54242 0.71 0.512428
Target:  5'- gUGUCUGGCuuuaauccuggaguGuaGCAUUGUaCAGCAUGCCc -3'
miRNA:   3'- -ACAGGCCG--------------U--UGUGGCAaGUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 14789 0.71 0.474002
Target:  5'- -uUCCGGCGccaGCCGUUgAcCAUGCCa -3'
miRNA:   3'- acAGGCCGUug-UGGCAAgUcGUACGG- -5'
21749 5' -54 NC_004813.1 + 22931 0.71 0.494603
Target:  5'- cUGaCCGGUGACugCG-UCAGCgugaacgguGUGCCa -3'
miRNA:   3'- -ACaGGCCGUUGugGCaAGUCG---------UACGG- -5'
21749 5' -54 NC_004813.1 + 30087 0.71 0.515602
Target:  5'- -aUCaCGGCAACACUGgcgaAGCccGUGCCg -3'
miRNA:   3'- acAG-GCCGUUGUGGCaag-UCG--UACGG- -5'
21749 5' -54 NC_004813.1 + 44881 0.7 0.580487
Target:  5'- cGUUCGGCuGCACCaGUcgcggUCAGgccccCGUGCCg -3'
miRNA:   3'- aCAGGCCGuUGUGG-CA-----AGUC-----GUACGG- -5'
21749 5' -54 NC_004813.1 + 21470 0.7 0.5586
Target:  5'- cGcCCGGUGuCACCGUacugCGGCGcGCCa -3'
miRNA:   3'- aCaGGCCGUuGUGGCAa---GUCGUaCGG- -5'
21749 5' -54 NC_004813.1 + 42673 0.69 0.602547
Target:  5'- cUGUCUGGCGuCACCGccacuggCAcGCAucUGCCu -3'
miRNA:   3'- -ACAGGCCGUuGUGGCaa-----GU-CGU--ACGG- -5'
21749 5' -54 NC_004813.1 + 30718 0.69 0.613621
Target:  5'- --aCCGGCuGCGCCGU--GGCG-GCCu -3'
miRNA:   3'- acaGGCCGuUGUGGCAagUCGUaCGG- -5'
21749 5' -54 NC_004813.1 + 48657 0.68 0.691027
Target:  5'- gGUCCGGCAGguCCG--CAGgG-GCCg -3'
miRNA:   3'- aCAGGCCGUUguGGCaaGUCgUaCGG- -5'
21749 5' -54 NC_004813.1 + 37095 0.68 0.6469
Target:  5'- aGUCUGGcCAGCGCCaGUguuuUCAGaucuuuUGCCa -3'
miRNA:   3'- aCAGGCC-GUUGUGG-CA----AGUCgu----ACGG- -5'
21749 5' -54 NC_004813.1 + 27304 0.68 0.657979
Target:  5'- -cUCCGGCAGCGUCGggucCGGCAUaCCa -3'
miRNA:   3'- acAGGCCGUUGUGGCaa--GUCGUAcGG- -5'
21749 5' -54 NC_004813.1 + 17996 0.68 0.669035
Target:  5'- aUGUCCGGCAuccCACUGagCAGaCGUGa- -3'
miRNA:   3'- -ACAGGCCGUu--GUGGCaaGUC-GUACgg -5'
21749 5' -54 NC_004813.1 + 38782 0.67 0.744799
Target:  5'- ----gGGCAGCcguguACCGUgcUCAGCAgGCCg -3'
miRNA:   3'- acaggCCGUUG-----UGGCA--AGUCGUaCGG- -5'
21749 5' -54 NC_004813.1 + 27622 0.67 0.701944
Target:  5'- aUGUCCGGgaaaaacaaAACAgCG-UCAGCcauUGCCg -3'
miRNA:   3'- -ACAGGCCg--------UUGUgGCaAGUCGu--ACGG- -5'
21749 5' -54 NC_004813.1 + 46347 0.67 0.723556
Target:  5'- --aCCGGCAACAUag---GGUAUGCCa -3'
miRNA:   3'- acaGGCCGUUGUGgcaagUCGUACGG- -5'
21749 5' -54 NC_004813.1 + 30349 0.67 0.755252
Target:  5'- cGUCCGGCAACcggaaACCGguggugaaaaUC-GCAucuucUGCCg -3'
miRNA:   3'- aCAGGCCGUUG-----UGGCa---------AGuCGU-----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.