miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21775 3' -57.1 NC_004813.1 + 30885 0.66 0.604263
Target:  5'- gAUCCGCA-GugGGCaGGCAG-CCUg- -3'
miRNA:   3'- -UGGGCGUaUugCCGaCCGUCuGGAgg -5'
21775 3' -57.1 NC_004813.1 + 46085 0.66 0.593436
Target:  5'- aGCuuGCGgaugaGAUGGC-GGagaugaAGACCUCCa -3'
miRNA:   3'- -UGggCGUa----UUGCCGaCCg-----UCUGGAGG- -5'
21775 3' -57.1 NC_004813.1 + 35931 0.67 0.570814
Target:  5'- uACCCGUAUGugGucccccuGCuggaUGGCAGGCCgUCg -3'
miRNA:   3'- -UGGGCGUAUugC-------CG----ACCGUCUGG-AGg -5'
21775 3' -57.1 NC_004813.1 + 30606 0.67 0.561181
Target:  5'- cAUCCaGCGUGcgcccuuccucuGCGGCuuUGGUcauGACCUCCu -3'
miRNA:   3'- -UGGG-CGUAU------------UGCCG--ACCGu--CUGGAGG- -5'
21775 3' -57.1 NC_004813.1 + 13657 0.67 0.55053
Target:  5'- uACCCGUuucAUcGCGGCacucUGGC-GACaCUCCu -3'
miRNA:   3'- -UGGGCG---UAuUGCCG----ACCGuCUG-GAGG- -5'
21775 3' -57.1 NC_004813.1 + 31466 0.68 0.478094
Target:  5'- uACCCGgaCAUGACccuGCUGGguGGCUccuUCCa -3'
miRNA:   3'- -UGGGC--GUAUUGc--CGACCguCUGG---AGG- -5'
21775 3' -57.1 NC_004813.1 + 31902 0.69 0.458251
Target:  5'- aACCUGUu--ACGGgaGGCAcacGCCUCCc -3'
miRNA:   3'- -UGGGCGuauUGCCgaCCGUc--UGGAGG- -5'
21775 3' -57.1 NC_004813.1 + 30474 0.69 0.448496
Target:  5'- aACaaGCGUGcaGC-GCUGGCAG-CCUCCc -3'
miRNA:   3'- -UGggCGUAU--UGcCGACCGUCuGGAGG- -5'
21775 3' -57.1 NC_004813.1 + 21365 0.7 0.401526
Target:  5'- gACCCGCGUAuuaaGCaGCUGGCGcGCCg-- -3'
miRNA:   3'- -UGGGCGUAU----UGcCGACCGUcUGGagg -5'
21775 3' -57.1 NC_004813.1 + 41694 0.7 0.366277
Target:  5'- aACgCGCAUAcaccCGGC-GGCGGACCaCCg -3'
miRNA:   3'- -UGgGCGUAUu---GCCGaCCGUCUGGaGG- -5'
21775 3' -57.1 NC_004813.1 + 31376 0.71 0.34947
Target:  5'- aACCUGCAgcccaccgguGCGGuCUGGCuGAUgUCCa -3'
miRNA:   3'- -UGGGCGUau--------UGCC-GACCGuCUGgAGG- -5'
21775 3' -57.1 NC_004813.1 + 13244 0.71 0.33322
Target:  5'- uCCUGUc-AugGGC-GGCAGACCUCUa -3'
miRNA:   3'- uGGGCGuaUugCCGaCCGUCUGGAGG- -5'
21775 3' -57.1 NC_004813.1 + 40815 0.72 0.309897
Target:  5'- cGCCCGCGUcagaggcauAAUGGCUucaGGUccGGCCUCCc -3'
miRNA:   3'- -UGGGCGUA---------UUGCCGA---CCGu-CUGGAGG- -5'
21775 3' -57.1 NC_004813.1 + 30359 0.72 0.309897
Target:  5'- uUCCGCAUucgcgggcACGGUgacGGCAGAcaCCUCCa -3'
miRNA:   3'- uGGGCGUAu-------UGCCGa--CCGUCU--GGAGG- -5'
21775 3' -57.1 NC_004813.1 + 31250 0.72 0.309897
Target:  5'- gACCCGaaaAaAGCGGCggUGGCAGAugUCUCCc -3'
miRNA:   3'- -UGGGCg--UaUUGCCG--ACCGUCU--GGAGG- -5'
21775 3' -57.1 NC_004813.1 + 29262 0.72 0.309897
Target:  5'- aACCCGCG-AAUGGCUGGgCugGGGCCaugCCu -3'
miRNA:   3'- -UGGGCGUaUUGCCGACC-G--UCUGGa--GG- -5'
21775 3' -57.1 NC_004813.1 + 44790 1.12 0.000415
Target:  5'- gACCCGCAUAACGGCUGGCAGACCUCCa -3'
miRNA:   3'- -UGGGCGUAUUGCCGACCGUCUGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.