Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21782 | 5' | -48.8 | NC_004813.1 | + | 32953 | 0.66 | 0.968531 |
Target: 5'- gGcCGGGAcaCGGAACACCgaacAGAcaAUUUCAGc -3' miRNA: 3'- gC-GCCCU--GCUUUGUGG----UCU--UAAAGUU- -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 4793 | 0.66 | 0.961149 |
Target: 5'- aGCGGGAUGAAaauuACAUgGcGAGUUUUGAc -3' miRNA: 3'- gCGCCCUGCUU----UGUGgU-CUUAAAGUU- -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 26380 | 0.67 | 0.952646 |
Target: 5'- uGCGGGgauaaucaaaaACGAuacACACCGGggUUUa-- -3' miRNA: 3'- gCGCCC-----------UGCUu--UGUGGUCuuAAAguu -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 31750 | 0.67 | 0.952646 |
Target: 5'- gGCGGuGGCGGugauCACCGGAGUg---- -3' miRNA: 3'- gCGCC-CUGCUuu--GUGGUCUUAaaguu -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 44486 | 0.67 | 0.939841 |
Target: 5'- gCGCGGGugGGucagcaugucccacaGGCACCAGGc------ -3' miRNA: 3'- -GCGCCCugCU---------------UUGUGGUCUuaaaguu -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 27510 | 0.68 | 0.906703 |
Target: 5'- uGCGGcAUGAGACGCCGGGAa----- -3' miRNA: 3'- gCGCCcUGCUUUGUGGUCUUaaaguu -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 29921 | 0.69 | 0.892197 |
Target: 5'- aGCGGG-UGAu-CACCGGGAUUcgUCAAc -3' miRNA: 3'- gCGCCCuGCUuuGUGGUCUUAA--AGUU- -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 38822 | 0.72 | 0.761762 |
Target: 5'- cCGCGGGACGGAgaugcagauuGCugCAGAGgcccgUCu- -3' miRNA: 3'- -GCGCCCUGCUU----------UGugGUCUUaa---AGuu -5' |
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21782 | 5' | -48.8 | NC_004813.1 | + | 46764 | 1.06 | 0.006832 |
Target: 5'- uCGCGGGACGAAACACCAGAAUUUCAAc -3' miRNA: 3'- -GCGCCCUGCUUUGUGGUCUUAAAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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