Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21784 | 3' | -58.2 | NC_004813.1 | + | 52941 | 1.1 | 0.000435 |
Target: 5'- aGCCGGAAAGCCGUUGCCGCAGGCGACc -3' miRNA: 3'- -CGGCCUUUCGGCAACGGCGUCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 50104 | 0.99 | 0.002925 |
Target: 5'- aGCCGGAAAGCCGUUGCCGCAuGCGACc -3' miRNA: 3'- -CGGCCUUUCGGCAACGGCGUcCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 40722 | 0.75 | 0.1721 |
Target: 5'- gGCCGGAccugAAGCCauuaUGCCucugacGCGGGCGGCg -3' miRNA: 3'- -CGGCCU----UUCGGca--ACGG------CGUCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 45114 | 0.73 | 0.229568 |
Target: 5'- uGCCGGAGA-CCGgUGCCGCcacGGUGAa -3' miRNA: 3'- -CGGCCUUUcGGCaACGGCGu--CCGCUg -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 14461 | 0.72 | 0.258063 |
Target: 5'- aGCCaGGggGGCaugggcaccaucaGUUGCUGC-GGCGGCu -3' miRNA: 3'- -CGG-CCuuUCGg------------CAACGGCGuCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 28435 | 0.72 | 0.264628 |
Target: 5'- uGCCGGGAucaugaugacggcGCUGUUacugaacugGCgGCAGGCGGCg -3' miRNA: 3'- -CGGCCUUu------------CGGCAA---------CGgCGUCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 24329 | 0.71 | 0.280935 |
Target: 5'- uGUCGGcu-GCCGUucuggcgcugauUGCCGCAGGUG-Cg -3' miRNA: 3'- -CGGCCuuuCGGCA------------ACGGCGUCCGCuG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 17123 | 0.7 | 0.317448 |
Target: 5'- cGCCGGAAuucaccgcucGCCuuGUUGaCCGCuGGCGAg -3' miRNA: 3'- -CGGCCUUu---------CGG--CAAC-GGCGuCCGCUg -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 42939 | 0.7 | 0.341018 |
Target: 5'- gGCCGGAAAGgguggaCUGcagauugUGCUGgGGGCGGCa -3' miRNA: 3'- -CGGCCUUUC------GGCa------ACGGCgUCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 30655 | 0.69 | 0.392742 |
Target: 5'- aGCCGGugaaacAGGCCGguaacgggaaugugGCCGC-GGUGGCu -3' miRNA: 3'- -CGGCCu-----UUCGGCaa------------CGGCGuCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 26219 | 0.69 | 0.380428 |
Target: 5'- cGCCGGAGGuGCCGguggcuucacgcacgGUaccggaGCAGGUGGCg -3' miRNA: 3'- -CGGCCUUU-CGGCaa-------------CGg-----CGUCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 13392 | 0.68 | 0.457047 |
Target: 5'- cGCCGGA----CGUUGCCGCgcuaacAGGCG-Ca -3' miRNA: 3'- -CGGCCUuucgGCAACGGCG------UCCGCuG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 39411 | 0.68 | 0.445453 |
Target: 5'- gGCUGGAAGaccGUCGUgugGCguuaauucgucaGCAGGCGGCa -3' miRNA: 3'- -CGGCCUUU---CGGCAa--CGg-----------CGUCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 40864 | 0.68 | 0.437816 |
Target: 5'- gGCCaGAuaGGGCCGgagGCgGCAGGCa-- -3' miRNA: 3'- -CGGcCU--UUCGGCaa-CGgCGUCCGcug -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 22471 | 0.68 | 0.437816 |
Target: 5'- aGCUGGGu-GCUGgaguacGCCGCGGGCaACg -3' miRNA: 3'- -CGGCCUuuCGGCaa----CGGCGUCCGcUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 35223 | 0.67 | 0.486717 |
Target: 5'- aGCCGGGAgcggaugcAGuCCGgUGCggaaauggCGCAGGCGGa -3' miRNA: 3'- -CGGCCUU--------UC-GGCaACG--------GCGUCCGCUg -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 35950 | 0.67 | 0.486717 |
Target: 5'- uGCUGGAuGGCag--GCCGUcGGUGGCg -3' miRNA: 3'- -CGGCCUuUCGgcaaCGGCGuCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 5965 | 0.67 | 0.506995 |
Target: 5'- cGCUGGcAucGCCuuuaaaUGCCGCuGGCGAa -3' miRNA: 3'- -CGGCC-UuuCGGca----ACGGCGuCCGCUg -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 40592 | 0.67 | 0.517269 |
Target: 5'- gGCUGGGcgGAGCgGUgGCCaauGCaaaAGGCGGCg -3' miRNA: 3'- -CGGCCU--UUCGgCAaCGG---CG---UCCGCUG- -5' |
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21784 | 3' | -58.2 | NC_004813.1 | + | 48233 | 0.67 | 0.527624 |
Target: 5'- aGCagGGGAGGCaucggaGUcaGCCcgGCAGGCGGCa -3' miRNA: 3'- -CGg-CCUUUCGg-----CAa-CGG--CGUCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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