Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
218 | 3' | -64.1 | AC_000008.1 | + | 810 | 0.66 | 0.217923 |
Target: 5'- ---cGCCGGCGCcCGGUucuCCGGAGcCGCc -3' miRNA: 3'- ggacCGGUCGCGcGUCG---GGCCUC-GCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 4615 | 0.66 | 0.223582 |
Target: 5'- --gGGCCcacgGGCG-GCGGCCUGG-GCGa -3' miRNA: 3'- ggaCCGG----UCGCgCGUCGGGCCuCGCg -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 5351 | 0.7 | 0.118227 |
Target: 5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3' miRNA: 3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 5478 | 0.72 | 0.073831 |
Target: 5'- gCgUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3' miRNA: 3'- -GgACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 7207 | 0.66 | 0.206972 |
Target: 5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3' miRNA: 3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 9454 | 0.66 | 0.206972 |
Target: 5'- --gGGUCGGCGaacggGCAGUgCCGGcGGCGCc -3' miRNA: 3'- ggaCCGGUCGCg----CGUCG-GGCC-UCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 10367 | 0.69 | 0.124854 |
Target: 5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3' miRNA: 3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 10453 | 0.8 | 0.017728 |
Target: 5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3' miRNA: 3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 10815 | 0.71 | 0.094607 |
Target: 5'- aCUGGCC-GCGCGCAGCguaagcgguuaggCUGGAaaGCg -3' miRNA: 3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 11236 | 0.73 | 0.065988 |
Target: 5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3' miRNA: 3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 12643 | 0.69 | 0.121167 |
Target: 5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3' miRNA: 3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 13201 | 0.77 | 0.030977 |
Target: 5'- gCUGGCCAGCGUGCAccaCCCGGcgcugauaguguuccAGUGCu -3' miRNA: 3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 13330 | 0.69 | 0.121498 |
Target: 5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3' miRNA: 3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 15967 | 0.68 | 0.162991 |
Target: 5'- --cGGCgCGGgcacuacCGCGC-GCCCuGGGGCGCg -3' miRNA: 3'- ggaCCG-GUC-------GCGCGuCGGG-CCUCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 16109 | 0.68 | 0.158707 |
Target: 5'- --cGGCCAuucagaccgugguGCGCGgAGCCCGGcGCu- -3' miRNA: 3'- ggaCCGGU-------------CGCGCgUCGGGCCuCGcg -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 16334 | 0.66 | 0.206972 |
Target: 5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3' miRNA: 3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 16416 | 0.71 | 0.087292 |
Target: 5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3' miRNA: 3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 16960 | 0.66 | 0.227617 |
Target: 5'- --aGGCUgaguacgucucgguGGCGCGggcaaacugcacCAGCCCGGGGCu- -3' miRNA: 3'- ggaCCGG--------------UCGCGC------------GUCGGGCCUCGcg -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 17115 | 0.67 | 0.196501 |
Target: 5'- cCCgaGGUCcGCGUGCGGCCaaucaagcaGGuGGCGCc -3' miRNA: 3'- -GGa-CCGGuCGCGCGUCGGg--------CC-UCGCG- -5' |
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218 | 3' | -64.1 | AC_000008.1 | + | 17394 | 0.67 | 0.176941 |
Target: 5'- gCUGGcCCAGCacuccgGUAGCCauGGGCGCg -3' miRNA: 3'- gGACC-GGUCGcg----CGUCGGgcCUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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