miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
218 3' -64.1 AC_000008.1 + 11236 0.73 0.065988
Target:  5'- --gGGCCuG-GCGCGGCuaGGAGCGCc -3'
miRNA:   3'- ggaCCGGuCgCGCGUCGggCCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 17115 0.67 0.196501
Target:  5'- cCCgaGGUCcGCGUGCGGCCaaucaagcaGGuGGCGCc -3'
miRNA:   3'- -GGa-CCGGuCGCGCGUCGGg--------CC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 7207 0.66 0.206972
Target:  5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3'
miRNA:   3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 24890 0.66 0.206972
Target:  5'- uCgUGcGCC-GUGCGCAGCCCcuGGAGagggaUGCa -3'
miRNA:   3'- -GgAC-CGGuCGCGCGUCGGG--CCUC-----GCG- -5'
218 3' -64.1 AC_000008.1 + 16334 0.66 0.206972
Target:  5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3'
miRNA:   3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5'
218 3' -64.1 AC_000008.1 + 23790 0.66 0.212387
Target:  5'- -aUGGCCGcgggcuggguGUGCGCGGCaCC--AGCGCg -3'
miRNA:   3'- ggACCGGU----------CGCGCGUCG-GGccUCGCG- -5'
218 3' -64.1 AC_000008.1 + 810 0.66 0.217923
Target:  5'- ---cGCCGGCGCcCGGUucuCCGGAGcCGCc -3'
miRNA:   3'- ggacCGGUCGCGcGUCG---GGCCUC-GCG- -5'
218 3' -64.1 AC_000008.1 + 21845 0.66 0.217923
Target:  5'- --cGGCCGGuCGCG-AGaCUgGGGGCGUa -3'
miRNA:   3'- ggaCCGGUC-GCGCgUC-GGgCCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 4615 0.66 0.223582
Target:  5'- --gGGCCcacgGGCG-GCGGCCUGG-GCGa -3'
miRNA:   3'- ggaCCGG----UCGCgCGUCGGGCCuCGCg -5'
218 3' -64.1 AC_000008.1 + 23195 0.67 0.196501
Target:  5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3'
miRNA:   3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5'
218 3' -64.1 AC_000008.1 + 22264 0.67 0.186495
Target:  5'- uCCgcaGCCacAGUGCGCAGauuaGGAGCGCc -3'
miRNA:   3'- -GGac-CGG--UCGCGCGUCggg-CCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 5478 0.72 0.073831
Target:  5'- gCgUGGCCcuuGGCGCGCAGCUUgcccuuggaGGAgGCGCc -3'
miRNA:   3'- -GgACCGG---UCGCGCGUCGGG---------CCU-CGCG- -5'
218 3' -64.1 AC_000008.1 + 16416 0.71 0.087292
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
218 3' -64.1 AC_000008.1 + 10815 0.71 0.094607
Target:  5'- aCUGGCC-GCGCGCAGCguaagcgguuaggCUGGAaaGCg -3'
miRNA:   3'- gGACCGGuCGCGCGUCG-------------GGCCUcgCG- -5'
218 3' -64.1 AC_000008.1 + 5351 0.7 0.118227
Target:  5'- uCCgGGCU-GCGCGCuGGCCagGGuGCGCu -3'
miRNA:   3'- -GGaCCGGuCGCGCG-UCGGg-CCuCGCG- -5'
218 3' -64.1 AC_000008.1 + 12643 0.69 0.121167
Target:  5'- aCCUGGaCCGGCuggugggggauguGCGCgAGgCCGuGGCGCa -3'
miRNA:   3'- -GGACC-GGUCG-------------CGCG-UCgGGCcUCGCG- -5'
218 3' -64.1 AC_000008.1 + 10367 0.69 0.124854
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5'
218 3' -64.1 AC_000008.1 + 16109 0.68 0.158707
Target:  5'- --cGGCCAuucagaccgugguGCGCGgAGCCCGGcGCu- -3'
miRNA:   3'- ggaCCGGU-------------CGCGCgUCGGGCCuCGcg -5'
218 3' -64.1 AC_000008.1 + 15967 0.68 0.162991
Target:  5'- --cGGCgCGGgcacuacCGCGC-GCCCuGGGGCGCg -3'
miRNA:   3'- ggaCCG-GUC-------GCGCGuCGGG-CCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 30531 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.