miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
218 3' -64.1 AC_000008.1 + 30266 0.66 0.205372
Target:  5'- aCCUGGCUcguGGaaugcgagaccgucUGCGgGGCCUGcGGCGCg -3'
miRNA:   3'- -GGACCGG---UC--------------GCGCgUCGGGCcUCGCG- -5'
218 3' -64.1 AC_000008.1 + 16960 0.66 0.227617
Target:  5'- --aGGCUgaguacgucucgguGGCGCGggcaaacugcacCAGCCCGGGGCu- -3'
miRNA:   3'- ggaCCGG--------------UCGCGC------------GUCGGGCCUCGcg -5'
218 3' -64.1 AC_000008.1 + 13201 0.77 0.030977
Target:  5'- gCUGGCCAGCGUGCAccaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
218 3' -64.1 AC_000008.1 + 13330 0.69 0.121498
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
218 3' -64.1 AC_000008.1 + 19891 0.69 0.139152
Target:  5'- --cGGCCGcguuuGUGCGCGcCCCaGGGCGCg -3'
miRNA:   3'- ggaCCGGU-----CGCGCGUcGGGcCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 24406 0.68 0.150442
Target:  5'- --cGGCCGccacgugugcGCGCGCGGgacuaauCCCGGuucGCGCg -3'
miRNA:   3'- ggaCCGGU----------CGCGCGUC-------GGGCCu--CGCG- -5'
218 3' -64.1 AC_000008.1 + 30531 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 10453 0.8 0.017728
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 29476 0.69 0.131824
Target:  5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3'
miRNA:   3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5'
218 3' -64.1 AC_000008.1 + 17394 0.67 0.176941
Target:  5'- gCUGGcCCAGCacuccgGUAGCCauGGGCGCg -3'
miRNA:   3'- gGACC-GGUCGcg----CGUCGGgcCUCGCG- -5'
218 3' -64.1 AC_000008.1 + 27232 0.67 0.186495
Target:  5'- uCCU-GCCcGCGCGCGGCgCCGacGUGCc -3'
miRNA:   3'- -GGAcCGGuCGCGCGUCG-GGCcuCGCG- -5'
218 3' -64.1 AC_000008.1 + 23718 0.67 0.180234
Target:  5'- uCC-GGCCccagcugccuccagGGCGCGuCGGCuuGGggcccAGCGCa -3'
miRNA:   3'- -GGaCCGG--------------UCGCGC-GUCGggCC-----UCGCG- -5'
218 3' -64.1 AC_000008.1 + 30465 0.79 0.022325
Target:  5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3'
miRNA:   3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 9454 0.66 0.206972
Target:  5'- --gGGUCGGCGaacggGCAGUgCCGGcGGCGCc -3'
miRNA:   3'- ggaCCGGUCGCg----CGUCG-GGCC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 16334 0.66 0.206972
Target:  5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3'
miRNA:   3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5'
218 3' -64.1 AC_000008.1 + 24890 0.66 0.206972
Target:  5'- uCgUGcGCC-GUGCGCAGCCCcuGGAGagggaUGCa -3'
miRNA:   3'- -GgAC-CGGuCGCGCGUCGGG--CCUC-----GCG- -5'
218 3' -64.1 AC_000008.1 + 7207 0.66 0.206972
Target:  5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3'
miRNA:   3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 17115 0.67 0.196501
Target:  5'- cCCgaGGUCcGCGUGCGGCCaaucaagcaGGuGGCGCc -3'
miRNA:   3'- -GGa-CCGGuCGCGCGUCGGg--------CC-UCGCG- -5'
218 3' -64.1 AC_000008.1 + 16416 0.71 0.087292
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
218 3' -64.1 AC_000008.1 + 10367 0.69 0.124854
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.