Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21853 | 3' | -52.1 | NC_004902.1 | + | 21104 | 0.67 | 0.738162 |
Target: 5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3' miRNA: 3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 21308 | 0.67 | 0.738162 |
Target: 5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3' miRNA: 3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 21206 | 0.67 | 0.738162 |
Target: 5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3' miRNA: 3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 38521 | 0.67 | 0.727138 |
Target: 5'- gUUGCCGAUAUucuccCAGGCAucCAUUGCCa -3' miRNA: 3'- gAACGGUUAUGu----GUCCGU--GUGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 5522 | 0.67 | 0.727138 |
Target: 5'- --cGCCAu--CACGgacGGCACGCuCACCa -3' miRNA: 3'- gaaCGGUuauGUGU---CCGUGUG-GUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 35501 | 0.68 | 0.716011 |
Target: 5'- --aGCCuaagugGCugGGGC-CACCACUUg -3' miRNA: 3'- gaaCGGuua---UGugUCCGuGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 18817 | 0.68 | 0.716011 |
Target: 5'- -cUGCUAAcucucagaauauUGCACAGGCACAggCAgCCa -3' miRNA: 3'- gaACGGUU------------AUGUGUCCGUGUg-GUgGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 28744 | 0.68 | 0.716011 |
Target: 5'- aCUUGCCAugguccagcuUGCGgAGGCcguCAUCGCCg -3' miRNA: 3'- -GAACGGUu---------AUGUgUCCGu--GUGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 29536 | 0.68 | 0.705919 |
Target: 5'- cCUUGUCGccuagcagucccugGCAgAuGGCACACCugCCg -3' miRNA: 3'- -GAACGGUua------------UGUgU-CCGUGUGGugGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 43831 | 0.68 | 0.704793 |
Target: 5'- -cUGCUGaggcGUACGCAGcgguGCGCGCUGCCUa -3' miRNA: 3'- gaACGGU----UAUGUGUC----CGUGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 15260 | 0.68 | 0.693498 |
Target: 5'- --cGUCGAUAguCAGGCugGCgGCgCCu -3' miRNA: 3'- gaaCGGUUAUguGUCCGugUGgUG-GG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 32632 | 0.68 | 0.693498 |
Target: 5'- aUUGCCcugGCACAGaGCccuGCCACUCa -3' miRNA: 3'- gAACGGuuaUGUGUC-CGug-UGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 36634 | 0.68 | 0.693498 |
Target: 5'- --cGCCAcgGCACAgucugaaccGGCugcuggcgGCACUGCCCu -3' miRNA: 3'- gaaCGGUuaUGUGU---------CCG--------UGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 27771 | 0.68 | 0.693498 |
Target: 5'- -aUGCCcguUGCcCgAGGCACGcCCAUCCg -3' miRNA: 3'- gaACGGuu-AUGuG-UCCGUGU-GGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 27902 | 0.68 | 0.682138 |
Target: 5'- --aGUUAGaGCgaGCGGGCGCACCGCUg -3' miRNA: 3'- gaaCGGUUaUG--UGUCCGUGUGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 30467 | 0.68 | 0.682138 |
Target: 5'- --cGCCGuccacAUGCAgAGGCAUGCCAgCa -3' miRNA: 3'- gaaCGGU-----UAUGUgUCCGUGUGGUgGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 21953 | 0.68 | 0.670726 |
Target: 5'- --aGCgCAGUGcCAUAGGCAuCACCugCa -3' miRNA: 3'- gaaCG-GUUAU-GUGUCCGU-GUGGugGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 10575 | 0.68 | 0.670726 |
Target: 5'- -cUGCCGAa--GCAGGCugGCCucaACUCu -3' miRNA: 3'- gaACGGUUaugUGUCCGugUGG---UGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 24597 | 0.68 | 0.670726 |
Target: 5'- uUUGCUGAcaGCACAGGCuCGCCugUa -3' miRNA: 3'- gAACGGUUa-UGUGUCCGuGUGGugGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 26752 | 0.68 | 0.670726 |
Target: 5'- -aUGCCuccggGgGCuGGCACACUGCCg -3' miRNA: 3'- gaACGGuua--UgUGuCCGUGUGGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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